Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G365000.1 | Wheat | cytosol | 55.92 | 61.46 |
| TraesCS2A01G346700.1 | Wheat | cytosol | 54.5 | 59.28 |
| TraesCS2D01G345400.1 | Wheat | cytosol | 53.08 | 57.14 |
| HORVU2Hr1G084420.1 | Barley | cytosol | 51.66 | 56.77 |
| Zm00001d050563_P001 | Maize | nucleus | 48.82 | 50.99 |
| Zm00001d016570_P001 | Maize | cytosol | 49.76 | 48.84 |
| EES05123 | Sorghum | nucleus | 48.34 | 47.44 |
| VIT_01s0010g03800.t01 | Wine grape | cytosol | 30.33 | 32.65 |
| KRH31520 | Soybean | cytosol | 21.8 | 30.26 |
| KRG97393 | Soybean | nucleus | 26.07 | 29.26 |
| PGSC0003DMT400084737 | Potato | cytosol | 27.96 | 28.5 |
| KRH76090 | Soybean | nucleus | 14.69 | 26.96 |
| Solyc05g015640.2.1 | Tomato | cytosol | 25.12 | 26.24 |
| Bra030034.1-P | Field mustard | cytosol | 23.22 | 24.75 |
| AT1G27300.1 | Thale cress | nucleus | 22.75 | 24.0 |
| CDY15722 | Canola | cytosol | 22.27 | 23.74 |
| CDY27605 | Canola | cytosol | 22.27 | 23.38 |
| CDY03907 | Canola | cytosol | 21.33 | 23.2 |
| CDX84933 | Canola | cytosol | 21.33 | 22.84 |
| Bra032817.1-P | Field mustard | nucleus | 21.33 | 22.39 |
Protein Annotations
| EMBL:AK111075 | EnsemblPlants:Os02t0509600-01 | EnsemblPlantsGene:Os02g0509600 | EntrezGene:4329447 | ncoils:Coil | PANTHER:PTHR35280 |
| ProteinID:BAD23664.1 | ProteinID:BAF08842.1 | ProteinID:BAS78850.1 | ProteinID:EAZ23183.1 | RefSeq:XP_015624150.1 | RefSeq:XP_015624151.1 |
| SEG:seg | UniParc:UPI00003B06FE | UniProt:Q6K2F2 | MapMan:35.2 | : | : |
Description
Conserved hypothetical protein. (Os02t0509600-01)
Coordinates
chr2:+:18219267..18220774
Molecular Weight (calculated)
23190.6 Da
IEP (calculated)
4.934
GRAVY (calculated)
-0.582
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPETAAFVG RDIDAATNGG EVAEERRRKV ELVQEAIREL LEEKRTGERR RRQGGDGGGE EARRDHEEEE DDLLSSLLSK VDALQNDAAL EQVKPNCSHP
101: NPEISKEVKL GDVAKDLNKI KRQNMITHIL LGTVIVMTAV WQFNEVSFLL AVKRKLSNPF KSLGDLIKSS LKGGGKPMIE APPLPPVGVP DVTRNDLPLL
201: LISNGNGNND D
101: NPEISKEVKL GDVAKDLNKI KRQNMITHIL LGTVIVMTAV WQFNEVSFLL AVKRKLSNPF KSLGDLIKSS LKGGGKPMIE APPLPPVGVP DVTRNDLPLL
201: LISNGNGNND D
001: MESSEDVENL SRAIEKLLHE KRKREASGDA FIEDADDQLF LSSLISQLES PNPKGKEDVI TGEEEEKEEE SADSSPSKGK SEGQRQLEES IEEIAKDIKK
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
Arabidopsis Description
F17L21.9 [Source:UniProtKB/TrEMBL;Acc:Q9FZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.