Factsheet for Os03t0156700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0643000-01
Os03t0837300-02
Os04t0429800-01
Os04t0534400-01
Os08t0156700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	Os03t0837300-02	AT2G23420.1	21798944
AT2G16800.1	Os04t0429800-01	AT2G23420.1	21798944
AT2G16800.1	Os02t0643000-01	AT3G60600.1	21798944
AT2G16800.1	Os04t0534400-01	AT3G60600.1	21798944
AT2G16800.1	Os08t0156700-01	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027721_P001	Maize	plastid	72.75	72.75
EER92833	Sorghum	plastid	71.63	70.64
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	69.38	67.86
TraesCS4D01G271200.1	Wheat	plastid	69.66	67.57
TraesCS4A01G033400.1	Wheat	mitochondrion	69.1	67.4
CDY17509	Canola	extracellular	15.17	66.67
GSMUA_Achr3P00650_001	Banana	mitochondrion	42.42	59.92
KRH39780	Soybean	plastid	52.25	56.36
Os06t0116400-01	Rice	mitochondrion, plastid	57.87	56.13
CDX76312	Canola	cytosol	8.99	55.17
Bra034673.1-P	Field mustard	mitochondrion	13.76	54.44
PGSC0003DMT400015782	Potato	plastid	56.46	53.89
HORVU4Hr1G072520.2	Barley	plastid	67.98	53.42
Solyc01g111620.2.1	Tomato	plastid	56.46	53.32
KRH24328	Soybean	plastid	55.06	52.83
Bra011583.1-P	Field mustard	plastid	52.25	52.25
CDY47481	Canola	plastid	53.65	52.19
Bra037287.1-P	Field mustard	plastid	53.65	52.19
VIT_03s0038g02470.t01	Wine grape	plastid	55.9	52.09
CDX69110	Canola	plastid	52.81	51.93
AT2G16800.1	Thale cress	plastid	54.21	51.88
CDY26789	Canola	plastid	53.37	51.49
KRH51392	Soybean	plastid	53.37	51.21
GSMUA_Achr1P07500_001	Banana	plastid	50.28	51.0
KRH60695	Soybean	plastid	54.21	50.92
Solyc08g005980.2.1	Tomato	plastid	53.93	50.13
GSMUA_AchrUn_...	Banana	plastid	43.26	50.0
AT4G35080.3	Thale cress	plastid	54.49	49.87
VIT_18s0001g14840.t01	Wine grape	plastid	53.09	49.35
PGSC0003DMT400038459	Potato	plastid	52.81	49.34
CDY52650	Canola	plastid	52.25	49.08
CDY17508	Canola	extracellular	19.1	28.94

Protein Annotations

EnsemblPlants:Os03t0156700-01	EnsemblPlantsGene:Os03g0156700	EntrezGene:4331671	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	ProteinID:AAM51836.1	ProteinID:ABF94060.1	ProteinID:BAF10925.1
ProteinID:BAS82368.1	ProteinID:EAZ10955.1	RefSeq:XP_015633090.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00000A96CB
UniProt:Q8LMQ1	MapMan:24.2.6.3	:	:	:	:

Description

zebra-necrosis like proteinNickel/cobalt transporter, high-affinity domain containing protein. (Os03t0156700-01)

Coordinates

chr3:-:3048617..3051742

Molecular Weight (calculated)

37059.8 Da

IEP (calculated)

10.223

GRAVY (calculated)

0.476

Length

356 amino acids

Sequence
(BLAST)

001: MERLISKSVA ARIPLPGGGS PSRRLAVAGL GGGGGVEPWA GRLRAQPRLG PIAARPHDGV SAPPREAAPA AAVGPPWKLL WSLLPKASRA ALFLLVALVT
101: GTLQSSIPYP AHASVQSITK TGGLFTSEIL SSGWAGFIAG CLHTLSGPDH LVALAPLSIG RSRLESGLVG ALWGCGHDAG QVIFGLLFLL LKDRLHIEIL
201: RTWGTRVVGL TLLIIGGMGI REATEVQESS LALEGVDCNI TSSEPLQTPA APRKKKVGFA TFATGVVHGL QPDALLMVLP SLALPSRFAG AAFLGMFLMG
301: TVFSMGSYTA FVGSCSEALK EKVPRITEKL TWAASLVAIC MGIALLVGQF FGFSLY

Best Arabidopsis Sequence Match ( AT4G35080.3 )
(BLAST)

001: MERLLQPSSS SSSISPSKFP SRTSPFLPRL RSSGLSFVST HRPESRRVSS ISCNSSQIPS LYTPIGSNTT NNSFNGSPKS DESKPNPGFL TRIATSASEQ
101: RKETYEKFVY SLLEKKIPRI TKSSNFTLST GTVILISAVA VLLLNPLLAP PAFASFQTAA KSGWLTSAWT GFLAGCLHTL SGPDHLAALA PLSIGRSKME
201: SAAVGALWGC GHDAGQVIFG LLFLLLKDRL HIEVLQTWGT RIVGLTLVII GAMGIKEASE IPEPCVALET DISMVSTEKE ALPLPKKKKI GFATFATGVV
301: HGLQPDALMI VLPALALPSR LAGSAFLIMF LVGTVIAMGS YTAFIGSCSE ALKEKVPRIT EKLTWVSSLV AIGLGLGIVI SPFFGFSLY

Arabidopsis Description

High-affinity nickel-transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JM82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.