CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04597
KRH22653
KRH26664
KRH28456
KRH57934
KRH63322
KRH65384
KRH76164
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	KRH04597	AT2G23420.1	21798944
AT2G16800.1	KRH28456	AT2G23420.1	21798944
AT2G16800.1	KRH57934	AT2G23420.1	21798944
AT2G16800.1	KRH63322	AT2G23420.1	21798944
AT2G16800.1	KRH77015	AT2G23420.1	21798944
AT2G16800.1	KRH65384	AT3G60600.1	21798944
AT2G16800.1	KRH76164	AT3G60600.1	21798944
AT2G16800.1	KRH22653	AT5G22290.1	21798944
AT2G16800.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51392	Soybean	plastid	81.79	83.56
KRH39780	Soybean	plastid	65.44	75.15
KRH24328	Soybean	plastid	71.5	73.05
VIT_03s0038g02470.t01	Wine grape	plastid	67.02	66.49
GSMUA_Achr3P00650_001	Banana	mitochondrion	43.27	65.08
PGSC0003DMT400015782	Potato	plastid	63.59	64.61
Solyc01g111620.2.1	Tomato	plastid	63.59	63.93
PGSC0003DMT400038459	Potato	plastid	63.06	62.73
AT2G16800.1	Thale cress	plastid	60.69	61.83
Solyc08g005980.2.1	Tomato	plastid	62.01	61.36
GSMUA_Achr1P07500_001	Banana	plastid	53.56	57.83
AT4G35080.3	Thale cress	plastid	58.84	57.33
Os06t0116400-01	Rice	mitochondrion, plastid	55.41	57.22
Bra034673.1-P	Field mustard	mitochondrion	13.46	56.67
CDX76312	Canola	cytosol	8.44	55.17
Zm00001d027721_P001	Maize	plastid	51.19	54.49
Os03t0156700-01	Rice	mitochondrion	50.92	54.21
EER89091	Sorghum	mitochondrion	53.3	53.58
EER92833	Sorghum	plastid	50.4	52.91
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	49.08	51.1
TraesCS4A01G033400.1	Wheat	mitochondrion	48.55	50.41
TraesCS4D01G271200.1	Wheat	plastid	48.81	50.41
GSMUA_AchrUn_...	Banana	plastid	40.11	49.35
TraesCS4A01G435600.1	Wheat	plastid	50.13	48.97
TraesCS7D01G044600.1	Wheat	plastid	50.13	48.72
TraesCS7A01G049500.1	Wheat	plastid	49.08	47.45
HORVU4Hr1G072520.2	Barley	plastid	49.87	41.72

Protein Annotations

EMBL:ACUP02002135	EMBL:BT096017	EnsemblPlants:KRH60695	EnsemblPlantsGene:GLYMA_04G003500	EntrezGene:100818218	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	ProteinID:KRH60695
ProteinID:KRH60695.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001B16BF9	UniProt:C6TEJ4	MapMan:24.2.6.3

Description

hypothetical protein

Coordinates

chr4:+:289392..291419

Molecular Weight (calculated)

40181.1 Da

IEP (calculated)

9.360

GRAVY (calculated)

0.471

Length

379 amino acids

Sequence
(BLAST)

001: MDRLLSSSSP PSFTFLTRFE SATARFNFSP STRSHSHLKR LSSICCQHAN PSPFSSSTPF LASSNHPINF PSFSSSSDPS TLESHSLNQI KTGAFPKPKV
101: ITARTLVILS ALAMILIQPT IAPAAFATFQ TAAKTGGPAA AAAVGRKLIH TELLSSAWTG FLAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQVLFGL IFLILKDQLH IEIIRTWGTR VVGLTLLIIG AMGIREASEV HAPIVALESG ECDVNVYESL DNPTVGKKKI GFATFATGIV HGLQPDALMM
301: VLPALALPSR LAGAAFLIMF LIGTVIAMGS YTVFIGSCSQ ALKDRVPRIT EKLTWVSSLI AIALGFAIII SQFFGFSLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.