Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76164 | Soybean | endoplasmic reticulum | 97.51 | 97.51 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 75.52 | 76.15 |
| Solyc01g090910.2.1 | Tomato | nucleus | 70.95 | 73.39 |
| AT2G45140.1 | Thale cress | cytosol | 72.61 | 73.22 |
| KRH28066 | Soybean | cytosol | 54.36 | 73.18 |
| Bra003313.1-P | Field mustard | cytosol | 67.22 | 72.65 |
| KRH04117 | Soybean | cytosol, nucleus, plasma membrane | 72.2 | 72.2 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 71.37 | 71.97 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 71.37 | 71.97 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 71.37 | 71.97 |
| Solyc10g018350.1.1 | Tomato | cytosol | 70.95 | 71.85 |
| KRH57391 | Soybean | endoplasmic reticulum, mitochondrion | 71.78 | 71.78 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 71.37 | 71.37 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 70.95 | 70.95 |
| CDY56247 | Canola | cytosol | 69.71 | 70.0 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 69.29 | 69.87 |
| CDY57247 | Canola | cytosol | 69.29 | 69.58 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 68.88 | 69.46 |
| CDY48365 | Canola | cytosol | 68.88 | 69.46 |
| Bra007547.1-P | Field mustard | cytosol | 68.46 | 69.33 |
| CDX71796 | Canola | cytosol | 68.46 | 69.33 |
| CDY41153 | Canola | cytosol | 68.05 | 68.91 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 68.05 | 68.33 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 68.05 | 68.33 |
| KRH77373 | Soybean | endoplasmic reticulum | 66.81 | 66.81 |
| AT3G60600.1 | Thale cress | cytosol | 68.05 | 64.06 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 63.49 | 64.02 |
| AT2G23830.1 | Thale cress | cytosol | 39.42 | 63.76 |
| Zm00001d049553_P001 | Maize | plasma membrane | 64.32 | 63.52 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 63.49 | 62.7 |
| Os08t0156700-01 | Rice | plasma membrane | 62.24 | 61.73 |
| TraesCS7D01G296400.1 | Wheat | cytosol | 61.0 | 60.49 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 61.0 | 60.49 |
| PGSC0003DMT400066920 | Potato | cytosol | 66.39 | 59.93 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 59.34 | 59.83 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 51.45 | 57.94 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 54.36 | 57.71 |
| Os04t0534400-01 | Rice | cytosol | 59.75 | 57.6 |
| EES12559 | Sorghum | cytosol | 59.34 | 57.43 |
| KXG31128 | Sorghum | cytosol | 53.53 | 57.33 |
| Zm00001d017390_P001 | Maize | cytosol | 53.11 | 56.89 |
| Zm00001d051288_P001 | Maize | cytosol | 52.7 | 56.44 |
| Solyc06g034220.2.1 | Tomato | nucleus | 52.7 | 55.95 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 52.7 | 55.7 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 52.7 | 55.7 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 57.26 | 55.42 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 57.26 | 55.42 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 57.26 | 55.42 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 52.28 | 55.26 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 51.87 | 54.82 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 56.43 | 54.62 |
| Bra035442.1-P | Field mustard | cytosol | 23.65 | 52.78 |
| PGSC0003DMT400076826 | Potato | cytosol | 12.86 | 51.67 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 59.34 | 51.07 |
| Os02t0643000-01 | Rice | plasma membrane | 53.94 | 50.19 |
| GSMUA_Achr11P... | Banana | cytosol | 41.49 | 50.0 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 61.0 | 49.83 |
| KRH04206 | Soybean | cytosol | 43.15 | 46.85 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 57.68 | 46.64 |
| KRH57501 | Soybean | plasma membrane | 40.66 | 46.45 |
| KRH28185 | Soybean | cytosol, golgi, nucleus | 41.91 | 46.12 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 18.26 | 43.14 |
| KRH77304 | Soybean | plasma membrane, vacuole | 42.32 | 40.96 |
| Zm00001d036342_P001 | Maize | cytosol | 39.83 | 38.4 |
| KRH02189 | Soybean | cytosol | 46.89 | 38.31 |
| KRH50932 | Soybean | cytosol | 46.47 | 37.97 |
| KRH11275 | Soybean | cytosol | 40.66 | 35.25 |
| KRG92793 | Soybean | cytosol | 41.49 | 20.79 |
| KRH34006 | Soybean | cytosol | 43.15 | 19.62 |
Protein Annotations
| EntrezGene:100305725 | Gene3D:2.60.40.10 | MapMan:20.7.1 | EMBL:ACUP02001338 | ncoils:Coil | EnsemblPlantsGene:GLYMA_03G032100 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | UniProt:I1JKU5 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| EnsemblPlants:KRH65384 | ProteinID:KRH65384 | ProteinID:KRH65384.1 | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 |
| PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix |
| UniParc:UPI00023BD0BE | InterPro:VAP | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:3654521..3658424
Molecular Weight (calculated)
26750.9 Da
IEP (calculated)
7.878
GRAVY (calculated)
-0.451
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGELLHIQ PQELQFPFEL RKQISCSLQL SNKTDNYVAF KVKTTNPKKY CVRPNTGVVM PRSTCDVIVT MQAQKEAPPD MQCKDKFLLQ SVVASPGATT
101: KDITPEMFNK ESGHDVEECK LRVVYVAPPQ PPSPVREGSD EDSSPRASVS ENGHSSAAEF TGASKAFNER GEHQDASFEA RALISKVTEE RNSIVEQNRR
201: LQQELELLRR DAGRSRGGVP FIYVVLVGII GLILGFLLKR T
101: KDITPEMFNK ESGHDVEECK LRVVYVAPPQ PPSPVREGSD EDSSPRASVS ENGHSSAAEF TGASKAFNER GEHQDASFEA RALISKVTEE RNSIVEQNRR
201: LQQELELLRR DAGRSRGGVP FIYVVLVGII GLILGFLLKR T
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.