Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH62532 | Soybean | endoplasmic reticulum | 85.01 | 85.3 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 39.01 | 37.3 |
| Solyc07g066170.2.1 | Tomato | nucleus | 19.93 | 34.93 |
| PGSC0003DMT400056956 | Potato | nucleus | 33.05 | 32.44 |
| AT5G56210.1 | Thale cress | nucleus | 27.77 | 32.02 |
| PGSC0003DMT400022426 | Potato | nucleus | 31.18 | 31.23 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 21.12 | 31.08 |
| Bra026434.1-P | Field mustard | nucleus | 25.89 | 30.71 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 14.31 | 30.43 |
| CDY17403 | Canola | nucleus | 14.31 | 30.43 |
| CDX89333 | Canola | nucleus | 25.55 | 30.3 |
| AT4G26455.1 | Thale cress | nucleus | 25.21 | 30.27 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 20.61 | 30.25 |
| CDX94330 | Canola | nucleus | 25.21 | 30.14 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 21.12 | 29.52 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 13.97 | 29.39 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 28.62 | 28.28 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 21.29 | 28.28 |
| GSMUA_Achr10P... | Banana | cytosol | 24.19 | 28.17 |
| CDX82542 | Canola | plastid | 20.95 | 27.77 |
| CDY24192 | Canola | plastid | 13.97 | 27.06 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 13.12 | 25.84 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 23.68 | 25.65 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 25.89 | 25.55 |
| Zm00001d005997_P002 | Maize | plastid | 22.83 | 24.91 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 22.83 | 24.63 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 22.49 | 24.54 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 22.32 | 24.39 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 16.52 | 24.19 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 12.44 | 24.17 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 22.49 | 24.09 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 20.95 | 23.75 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 21.98 | 23.67 |
| Os08t0497900-01 | Rice | nucleus | 18.57 | 23.59 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 21.81 | 23.44 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 12.27 | 23.38 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 21.98 | 23.37 |
| EES14314 | Sorghum | nucleus | 20.1 | 23.32 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 17.55 | 22.29 |
| Os09t0481300-01 | Rice | nucleus | 19.76 | 22.01 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 21.29 | 21.89 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 17.55 | 20.2 |
| OQU81760 | Sorghum | nucleus | 14.65 | 20.19 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 17.38 | 20.0 |
| Zm00001d025667_P001 | Maize | cytosol | 16.01 | 19.26 |
Protein Annotations
| EMBL:ACUP02004114 | EnsemblPlants:KRH56393 | EnsemblPlantsGene:GLYMA_06G321400 | EntrezGene:100781757 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | ProteinID:KRH56393 | ProteinID:KRH56393.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00023C6BBD | UniProt:K7KYN1 | MapMan:20.4.2.1.2 | : |
Description
hypothetical protein
Coordinates
chr6:+:51001463..51006030
Molecular Weight (calculated)
63327.1 Da
IEP (calculated)
4.517
GRAVY (calculated)
-0.563
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLGSESVEE NEVNHDGNGN GGSYDDDEII GFGLEGNSDV NGSDQKGTVG EVEVGSSGEG VNSKGTPTKG FGLKKWKRIR RNVVKDPSSS VDSGKVLKRG
101: LSGNANLSES QSFLRDVKEK SDGSSNMFGN VVFSDGNVIH GSSLDSRYAL GSGFVVGTDS ENSEDRSSKS STAASEPKLR QAKSRSKNVN SKHLANSAQR
201: VQQGKGRTEG SNKPGGGGTV KIEKENSFSS LESDSRSSNF KQGVFLVTSN GKHSGKPNVY DGVNSGEAHT SEHFTEGVEG GYGNENVVED EDLLQENLGT
301: NLSWDVAEEK SVNNPSSAIE DPLIESVSCL QAVQEALQEE LQKFREIGIE AVSLDDDSAK CSSASAGTTI DLGLNKSSQS GQSGAEEIKQ TASSSSDPQV
401: LSLTQNINIL ESKLEDLQGV LALRDSRIAE LETSSSSVKI SREESARTVD SSDEKCKVVE SELEDLFRLR IEAEVECLAI SKVMQNLKDG AVFHQTLLEE
501: QEKLSKSQVQ VLNKLVDAES KASVLKNKAE ELEKYCGDSV VVEESFVLQR RVCKMSFYLF IQFMFLVLIF WLYMSQLSQN SGMVVPT
101: LSGNANLSES QSFLRDVKEK SDGSSNMFGN VVFSDGNVIH GSSLDSRYAL GSGFVVGTDS ENSEDRSSKS STAASEPKLR QAKSRSKNVN SKHLANSAQR
201: VQQGKGRTEG SNKPGGGGTV KIEKENSFSS LESDSRSSNF KQGVFLVTSN GKHSGKPNVY DGVNSGEAHT SEHFTEGVEG GYGNENVVED EDLLQENLGT
301: NLSWDVAEEK SVNNPSSAIE DPLIESVSCL QAVQEALQEE LQKFREIGIE AVSLDDDSAK CSSASAGTTI DLGLNKSSQS GQSGAEEIKQ TASSSSDPQV
401: LSLTQNINIL ESKLEDLQGV LALRDSRIAE LETSSSSVKI SREESARTVD SSDEKCKVVE SELEDLFRLR IEAEVECLAI SKVMQNLKDG AVFHQTLLEE
501: QEKLSKSQVQ VLNKLVDAES KASVLKNKAE ELEKYCGDSV VVEESFVLQR RVCKMSFYLF IQFMFLVLIF WLYMSQLSQN SGMVVPT
001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
Arabidopsis Description
WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.