Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 nucleus: 27291164 mitochondrion: 27780359 endoplasmic reticulum: 28499913 mitochondrion: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
27780359
doi
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94268 | Soybean | nucleus | 91.43 | 91.87 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 78.1 | 81.59 |
| Solyc02g068130.2.1 | Tomato | plastid | 75.24 | 77.45 |
| PGSC0003DMT400052223 | Potato | cytosol | 71.43 | 73.17 |
| Solyc02g094140.2.1 | Tomato | cytosol | 67.62 | 69.61 |
| KRH31475 | Soybean | mitochondrion | 65.71 | 68.66 |
| KRG97423 | Soybean | cytosol | 66.19 | 64.06 |
| PGSC0003DMT400056939 | Potato | cytosol | 48.57 | 60.35 |
| Bra032980.1-P | Field mustard | cytosol | 56.67 | 59.8 |
| CDY34181 | Canola | cytosol | 56.67 | 59.8 |
| PGSC0003DMT400056935 | Potato | cytosol | 53.33 | 58.33 |
| CDY28496 | Canola | cytosol | 55.24 | 57.43 |
| AT5G40930.1 | Thale cress | cytosol | 50.95 | 57.22 |
| AT3G27080.1 | Thale cress | cytosol | 54.29 | 56.44 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 20.0 | 55.26 |
| EES01977 | Sorghum | cytosol | 52.38 | 54.19 |
| Zm00001d012017_P002 | Maize | mitochondrion | 51.9 | 53.96 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 51.9 | 53.96 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 51.43 | 53.2 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 49.52 | 49.52 |
| TraesCS3B01G467700.1 | Wheat | golgi | 49.05 | 49.28 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 48.57 | 48.8 |
| Zm00001d040209_P001 | Maize | cytosol | 30.48 | 39.26 |
| AT3G27070.2 | Thale cress | plasma membrane | 38.57 | 32.66 |
| HORVU3Hr1G094550.2 | Barley | plastid | 28.1 | 26.34 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 17.62 | 22.56 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100819858 | MapMan:23.2.1.5 | EMBL:ACUP02002881 | EMBL:BT098984 | UniProt:C6TMM7 |
| EnsemblPlantsGene:GLYMA_05G079100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 | InterPro:IPR011990 |
| EnsemblPlants:KRH57705 | ProteinID:KRH57705 | ProteinID:KRH57705.1 | PFAM:PD102047 | PFAM:PF06552 | PANTHER:PTHR32409 |
| SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0001B1728F | SEG:seg |
Description
hypothetical protein
Coordinates
chr5:+:10836253..10840901
Molecular Weight (calculated)
23457.5 Da
IEP (calculated)
5.630
GRAVY (calculated)
-0.603
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQQSEFDR LLFFEHARKA AEAEYEKNPL DADNLTRWGG ALLELSQFQS FPESKKMTQE AVSKLEEALA VNPKKHDTLW CLGNAHTSQA FLIPDQDEAK
101: VYFDKAAEYF QQAVDEDPSN ELYRKSLEVA AKAPELHVEI HKHGFGQQQQ QQAAATAGSS TSASTNTQKK KKSSDLKYDI FGWIILAVGI VAWVGFAKSN
201: LPPPPPPPPR
101: VYFDKAAEYF QQAVDEDPSN ELYRKSLEVA AKAPELHVEI HKHGFGQQQQ QQAAATAGSS TSASTNTQKK KKSSDLKYDI FGWIILAVGI VAWVGFAKSN
201: LPPPPPPPPR
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.