Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27390.1 | KRH41747 | AT3G20000.1 | 17981999 |
| AT1G27390.1 | KRH60449 | AT3G20000.1 | 17981999 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31475 | Soybean | mitochondrion | 88.02 | 95.02 |
| KRG94268 | Soybean | nucleus | 65.44 | 67.94 |
| KRH57705 | Soybean | nucleus | 64.06 | 66.19 |
| Solyc02g068130.2.1 | Tomato | plastid | 61.29 | 65.2 |
| PGSC0003DMT400052223 | Potato | cytosol | 58.06 | 61.46 |
| Solyc02g094140.2.1 | Tomato | cytosol | 53.92 | 57.35 |
| PGSC0003DMT400056939 | Potato | cytosol | 43.78 | 56.21 |
| CDX84923 | Canola | cytosol | 52.07 | 54.33 |
| Bra032826.1-P | Field mustard | cytosol | 53.0 | 54.25 |
| CDY27615 | Canola | cytosol | 53.0 | 54.25 |
| PGSC0003DMT400056935 | Potato | cytosol | 47.0 | 53.12 |
| CDY03918 | Canola | cytosol | 50.23 | 52.4 |
| CDY11814 | Canola | cytosol | 50.23 | 52.4 |
| AT1G27390.1 | Thale cress | cytosol | 50.69 | 52.38 |
| EES01977 | Sorghum | cytosol | 48.85 | 52.22 |
| Bra010946.1-P | Field mustard | cytosol | 50.23 | 52.15 |
| CDY15710 | Canola | cytosol | 50.69 | 51.89 |
| CDX90082 | Canola | cytosol | 49.31 | 51.44 |
| Bra030044.1-P | Field mustard | cytosol | 50.69 | 51.16 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 47.47 | 50.99 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 47.47 | 50.74 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 17.51 | 50.0 |
| Zm00001d012017_P002 | Maize | mitochondrion | 44.7 | 48.02 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 45.16 | 46.67 |
| TraesCS3B01G467700.1 | Wheat | golgi | 44.7 | 46.41 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 44.24 | 45.93 |
| Zm00001d040209_P001 | Maize | cytosol | 26.73 | 35.58 |
| HORVU3Hr1G094550.2 | Barley | plastid | 24.42 | 23.66 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 13.82 | 18.29 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100775949 | MapMan:23.2.1.5 | UniProt:A0A0R0EU31 | EMBL:ACUP02010798 | EnsemblPlantsGene:GLYMA_18G007000 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | EnsemblPlants:KRG97423 | ProteinID:KRG97423 | ProteinID:KRG97423.1 | PFAM:PD102047 | PFAM:PF06552 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI0006ED6043 | : | : |
Description
hypothetical protein
Coordinates
chr18:-:509938..513724
Molecular Weight (calculated)
24375.9 Da
IEP (calculated)
5.596
GRAVY (calculated)
-0.360
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSQDDFDR LLLFEHTRKS AEANYAENPL DADVRIVLHL HSMSYFAHTN LTKWGGALIE LSSFQAPKDA KAMIDDALSK LEEALLINPT KHDTLWCLGN
101: ANTSYAFLIP DITEAKGYFD KALDYFQKAV DEDPENDLYR KSLQVAIKAP ELHMEIHKNG LGLMSNAGSS ATSKEKESKR QKSNDFKYDI FGWIILAVGI
201: VAWVGMAKSN IPPPPPR
101: ANTSYAFLIP DITEAKGYFD KALDYFQKAV DEDPENDLYR KSLQVAIKAP ELHMEIHKNG LGLMSNAGSS ATSKEKESKR QKSNDFKYDI FGWIILAVGI
201: VAWVGMAKSN IPPPPPR
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.