CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82267
CDY24571
CDY25368
CDY33440
CDY36066
CDY42223

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	CDX82267	AT3G20000.1	17981999
AT1G27390.1	CDY24571	AT3G20000.1	17981999
AT1G27390.1	CDY25368	AT3G20000.1	17981999
AT1G27390.1	CDY33440	AT3G20000.1	17981999
AT1G27390.1	CDY36066	AT3G20000.1	17981999
AT1G27390.1	CDY42223	AT3G20000.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032826.1-P	Field mustard	cytosol	100.0	100.0
CDX84923	Canola	cytosol	95.75	97.6
CDY15710	Canola	cytosol	79.25	79.25
CDY03918	Canola	cytosol	73.58	75.0
AT1G27390.1	Thale cress	cytosol	72.64	73.33
CDX90082	Canola	cytosol	70.75	72.12
CDY11814	Canola	cytosol	69.34	70.67
Solyc02g068130.2.1	Tomato	plastid	56.13	58.33
PGSC0003DMT400052223	Potato	cytosol	55.66	57.56
KRH31475	Soybean	mitochondrion	53.77	56.72
Solyc02g094140.2.1	Tomato	cytosol	53.77	55.88
KRG97423	Soybean	cytosol	54.25	53.0
CDY34181	Canola	cytosol	47.64	50.75
CDY28496	Canola	cytosol	47.17	49.51
PGSC0003DMT400056939	Potato	cytosol	38.21	47.93
PGSC0003DMT400056935	Potato	cytosol	43.4	47.92
EES01977	Sorghum	cytosol	45.75	47.78
Zm00001d012017_P002	Maize	mitochondrion	45.28	47.52
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	45.28	47.29
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	16.04	44.74
Os01t0921600-01	Rice	mitochondrion, plastid	41.51	43.56
TraesCS3A01G429800.1	Wheat	cytosol	42.92	43.33
TraesCS3D01G425100.1	Wheat	cytosol	42.45	43.06
TraesCS3B01G467700.1	Wheat	golgi	41.98	42.58
Zm00001d040209_P001	Maize	cytosol	27.83	36.2
CDY35747	Canola	cytosol	20.75	34.38
HORVU3Hr1G094550.2	Barley	plastid	25.0	23.66
HORVU7Hr1G075380.6	Barley	cytosol, plastid	15.57	20.12

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	GO:A0A078GM34	UniProt:A0A078GM34	EnsemblPlants:CDY27615	ProteinID:CDY27615
ProteinID:CDY27615.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0045040	EnsemblPlantsGene:GSBRNA2T00038363001
InterPro:IPR011990	PFAM:PD102047	PFAM:PF06552	PANTHER:PTHR32409	SUPFAM:SSF48452	TMHMM:TMhelix
InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002542595	SEG:seg	:	:

Description

BnaA09g27920DBnaA09g27920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM34]

Coordinates

chrLK032207:-:307882..309581

Molecular Weight (calculated)

22837.1 Da

IEP (calculated)

5.939

GRAVY (calculated)

-0.383

Length

212 amino acids

Sequence
(BLAST)

001: MEFSAADFER LLMFEHARKA CEAQYAKDPL DSENLLQWGG ALLELAQFQS IPEAKLMLND AVSKLEEVLT LNPGKHQALW CLGNAYTAHA FLTPDTDEAK
101: VHFDKAADYF QRAENEDPGN EMYLKSLEVT ARAPGLHMNI HGNGTMQQSL GGGGGGGGGP SASSNAGGGK KKNKKKNNDF TYDVCGWIIL AFGIVAWVGM
201: AKSLGPPPPP AR

Best Arabidopsis Sequence Match ( AT1G27390.1 )
(BLAST)

001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR

Arabidopsis Description

TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.