Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G425100.1 | Wheat | cytosol | 96.19 | 96.65 |
| TraesCS3B01G467700.1 | Wheat | golgi | 96.19 | 96.65 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 75.71 | 78.71 |
| EES01977 | Sorghum | cytosol | 65.71 | 67.98 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 65.24 | 67.49 |
| Zm00001d012017_P002 | Maize | mitochondrion | 62.86 | 65.35 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 53.33 | 55.72 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.86 | 55.22 |
| GSMUA_Achr8P09300_001 | Banana | cytosol | 52.38 | 54.73 |
| Solyc02g068130.2.1 | Tomato | plastid | 51.43 | 52.94 |
| AT5G40930.1 | Thale cress | cytosol | 45.24 | 50.8 |
| PGSC0003DMT400052223 | Potato | cytosol | 49.52 | 50.73 |
| KRG94268 | Soybean | nucleus | 50.48 | 50.72 |
| GSMUA_Achr8P00740_001 | Banana | cytosol | 40.48 | 49.71 |
| KRH57705 | Soybean | nucleus | 49.52 | 49.52 |
| Solyc02g094140.2.1 | Tomato | cytosol | 48.1 | 49.51 |
| KRH31475 | Soybean | mitochondrion | 46.19 | 48.26 |
| HORVU3Hr1G094550.2 | Barley | plastid | 49.52 | 46.43 |
| KRG97423 | Soybean | cytosol | 46.67 | 45.16 |
| PGSC0003DMT400056939 | Potato | cytosol | 36.19 | 44.97 |
| AT1G27390.1 | Thale cress | cytosol | 44.76 | 44.76 |
| PGSC0003DMT400056935 | Potato | cytosol | 40.48 | 44.27 |
| CDY34181 | Canola | cytosol | 41.43 | 43.72 |
| Bra032980.1-P | Field mustard | cytosol | 41.43 | 43.72 |
| CDY27615 | Canola | cytosol | 43.33 | 42.92 |
| Bra032826.1-P | Field mustard | cytosol | 43.33 | 42.92 |
| CDX84923 | Canola | cytosol | 42.38 | 42.79 |
| CDY28496 | Canola | cytosol | 40.95 | 42.57 |
| CDY03918 | Canola | cytosol | 41.9 | 42.31 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 14.76 | 40.79 |
| AT3G27080.1 | Thale cress | cytosol | 39.05 | 40.59 |
| CDY15710 | Canola | cytosol | 39.52 | 39.15 |
| CDY11814 | Canola | cytosol | 38.57 | 38.94 |
| Bra030044.1-P | Field mustard | cytosol | 39.52 | 38.6 |
| CDX90082 | Canola | cytosol | 37.62 | 37.98 |
| Bra010946.1-P | Field mustard | cytosol | 37.14 | 37.32 |
| CDY35747 | Canola | cytosol | 18.1 | 29.69 |
| AT3G27070.2 | Thale cress | plasma membrane | 31.9 | 27.02 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0045040 | InterPro:IPR011990 |
| PFAM:PD102047 | PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt |
| InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS3A01G429800 | EnsemblPlants:TraesCS3A01G429800.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3A:+:672552104..672556323
Molecular Weight (calculated)
23312.4 Da
IEP (calculated)
4.940
GRAVY (calculated)
-0.545
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMAAMNDPE RLFFFDLACK TAKSTYDENP LDADNLTRWG GALLELSQMQ NGPESLKCLE DAESKLDEAL RIDPNKADAL WCLGNALTSR GFFTSETVQA
101: NECFEKATGC FQRAVDVEPA NELYRKSLDL SSKAPELHME IHRQIASQAS QGAPSSSNAR QSRKKKKNND FWYDLAGWGI LLVGIGVWLG VANSQAKEAQ
201: PPHMSHQPNM
101: NECFEKATGC FQRAVDVEPA NELYRKSLDL SSKAPELHME IHRQIASQAS QGAPSSSNAR QSRKKKKNND FWYDLAGWGI LLVGIGVWLG VANSQAKEAQ
201: PPHMSHQPNM
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.