Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032980.1-P | Field mustard | cytosol | 63.86 | 64.82 |
| CDY34181 | Canola | cytosol | 63.86 | 64.82 |
| CDY28496 | Canola | cytosol | 63.37 | 63.37 |
| KRG94268 | Soybean | nucleus | 59.9 | 57.89 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 57.43 | 57.71 |
| PGSC0003DMT400052223 | Potato | cytosol | 57.92 | 57.07 |
| AT5G40930.1 | Thale cress | cytosol | 51.49 | 55.62 |
| Solyc02g094140.2.1 | Tomato | cytosol | 55.45 | 54.9 |
| Solyc02g068130.2.1 | Tomato | plastid | 55.45 | 54.9 |
| KRH57705 | Soybean | nucleus | 56.44 | 54.29 |
| PGSC0003DMT400056939 | Potato | cytosol | 38.61 | 46.15 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 45.05 | 45.05 |
| PGSC0003DMT400056935 | Potato | cytosol | 42.08 | 44.27 |
| AT3G27070.2 | Thale cress | plasma membrane | 53.47 | 43.55 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 16.34 | 43.42 |
| EES01977 | Sorghum | cytosol | 43.56 | 43.35 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 43.56 | 43.35 |
| Zm00001d012017_P002 | Maize | mitochondrion | 43.07 | 43.07 |
| AT1G27390.1 | Thale cress | cytosol | 44.55 | 42.86 |
| TraesCS3B01G467700.1 | Wheat | golgi | 41.58 | 40.19 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 41.58 | 40.19 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 40.59 | 39.05 |
| Zm00001d040209_P001 | Maize | cytosol | 25.74 | 31.9 |
| HORVU3Hr1G094550.2 | Barley | plastid | 24.26 | 21.88 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 15.35 | 18.9 |
Protein Annotations
| Gene3D:1.25.40.10 | PDB:1ZU2 | MapMan:23.2.1.5 | EntrezGene:822326 | ProteinID:AEE77264.1 | EMBL:AJ296025 |
| ArrayExpress:AT3G27080 | EnsemblPlantsGene:AT3G27080 | RefSeq:AT3G27080 | TAIR:AT3G27080 | RefSeq:AT3G27080-TAIR-G | EnsemblPlants:AT3G27080.1 |
| TAIR:AT3G27080.1 | EMBL:AY040027 | EMBL:AY079411 | EMBL:AY087037 | ProteinID:BAB01089.1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0005742 | GO:GO:0005743 | GO:GO:0005744 |
| GO:GO:0006626 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0015450 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 | GO:GO:0071806 | InterPro:IPR011990 |
| RefSeq:NP_189344.1 | UniProt:P82874 | PFAM:PD102047 | PFAM:PF06552 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | Symbol:TOM20-3 | InterPro:TOM20_imprt_rcpt |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI0000001766 | : | : | : | : |
Description
TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
Coordinates
chr3:-:9984947..9986738
Molecular Weight (calculated)
22566.6 Da
IEP (calculated)
4.694
GRAVY (calculated)
-0.420
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.