Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 59.89 | 55.72 |
| KRG94268 | Soybean | nucleus | 58.82 | 52.63 |
| AT3G27080.1 | Thale cress | cytosol | 55.62 | 51.49 |
| Solyc02g094140.2.1 | Tomato | cytosol | 56.15 | 51.47 |
| PGSC0003DMT400052223 | Potato | cytosol | 56.15 | 51.22 |
| KRH57705 | Soybean | nucleus | 57.22 | 50.95 |
| Solyc02g068130.2.1 | Tomato | plastid | 55.08 | 50.49 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 49.73 | 46.04 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 51.34 | 45.93 |
| TraesCS3B01G467700.1 | Wheat | golgi | 51.34 | 45.93 |
| EES01977 | Sorghum | cytosol | 49.73 | 45.81 |
| PGSC0003DMT400056939 | Potato | cytosol | 41.18 | 45.56 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 50.8 | 45.24 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 47.59 | 43.84 |
| PGSC0003DMT400056935 | Potato | cytosol | 44.38 | 43.23 |
| Zm00001d012017_P002 | Maize | mitochondrion | 46.52 | 43.07 |
| AT1G27390.1 | Thale cress | cytosol | 48.13 | 42.86 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 16.04 | 39.47 |
| Zm00001d040209_P001 | Maize | cytosol | 29.41 | 33.74 |
| AT3G27070.2 | Thale cress | plasma membrane | 43.85 | 33.06 |
| HORVU3Hr1G094550.2 | Barley | plastid | 30.48 | 25.45 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 19.25 | 21.95 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | EntrezGene:834094 | ProteinID:AED94616.1 | EMBL:AF462861 | EMBL:AK117822 |
| ArrayExpress:AT5G40930 | EnsemblPlantsGene:AT5G40930 | RefSeq:AT5G40930 | TAIR:AT5G40930 | RefSeq:AT5G40930-TAIR-G | EnsemblPlants:AT5G40930.1 |
| TAIR:AT5G40930.1 | EMBL:AY141998 | Unigene:At.28254 | ProteinID:BAB10523.1 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005741 | GO:GO:0005742 | GO:GO:0005744 | GO:GO:0005773 | GO:GO:0005774 |
| GO:GO:0006626 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0015450 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 | GO:GO:0071806 | InterPro:IPR011990 |
| RefSeq:NP_198909.1 | UniProt:P82805 | PFAM:PD102047 | PFAM:PF06552 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix |
| Symbol:TOM20-4 | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0000000F2E | : | : |
Description
TOM20-4Mitochondrial import receptor subunit TOM20-4 [Source:UniProtKB/Swiss-Prot;Acc:P82805]
Coordinates
chr5:+:16404457..16406079
Molecular Weight (calculated)
20973.8 Da
IEP (calculated)
5.318
GRAVY (calculated)
-0.351
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMQNENERL MVFEHARKVA EATYVKNPLD AENLTRWAGA LLELSQFQTE PKQMILEAIL KLGEALVIDP KKHDALWLIG NAHLSFGFLS SDQTEASDNF
101: EKASQFFQLA VEEQPESELY RKSLTLASKA PELHTGGTAG PSSNSAKTMK QKKTSEFKYD VFGWVILASY VVAWISFANS QTPVSRQ
101: EKASQFFQLA VEEQPESELY RKSLTLASKA PELHTGGTAG PSSNSAKTMK QKKTSEFKYD VFGWVILASY VVAWISFANS QTPVSRQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.