Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 mitochondrion: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH57705 | Soybean | nucleus | 91.87 | 91.43 |
VIT_14s0068g02030.t01 | Wine grape | cytosol | 78.47 | 81.59 |
Solyc02g068130.2.1 | Tomato | plastid | 72.73 | 74.51 |
PGSC0003DMT400052223 | Potato | cytosol | 72.73 | 74.15 |
KRH31475 | Soybean | mitochondrion | 66.99 | 69.65 |
Solyc02g094140.2.1 | Tomato | cytosol | 66.51 | 68.14 |
KRG97423 | Soybean | cytosol | 67.94 | 65.44 |
AT3G27080.1 | Thale cress | cytosol | 57.89 | 59.9 |
Bra032980.1-P | Field mustard | cytosol | 56.94 | 59.8 |
CDY34181 | Canola | cytosol | 56.94 | 59.8 |
PGSC0003DMT400056939 | Potato | cytosol | 47.85 | 59.17 |
AT5G40930.1 | Thale cress | cytosol | 52.63 | 58.82 |
CDY28496 | Canola | cytosol | 55.5 | 57.43 |
PGSC0003DMT400056935 | Potato | cytosol | 51.67 | 56.25 |
EES01977 | Sorghum | cytosol | 54.55 | 56.16 |
Os01t0921600-01 | Rice | mitochondrion, plastid | 53.59 | 55.45 |
GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 20.1 | 55.26 |
Zm00001d012017_P002 | Maize | mitochondrion | 53.11 | 54.95 |
Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 53.11 | 54.68 |
TraesCS3A01G429800.1 | Wheat | cytosol | 50.72 | 50.48 |
TraesCS3B01G467700.1 | Wheat | golgi | 50.24 | 50.24 |
TraesCS3D01G425100.1 | Wheat | cytosol | 50.24 | 50.24 |
Zm00001d040209_P001 | Maize | cytosol | 30.62 | 39.26 |
AT3G27070.2 | Thale cress | plasma membrane | 40.19 | 33.87 |
HORVU3Hr1G094550.2 | Barley | plastid | 28.23 | 26.34 |
HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 17.7 | 22.56 |
Protein Annotations
Gene3D:1.25.40.10 | EntrezGene:100499753 | MapMan:23.2.1.5 | EMBL:ACUP02011915 | EMBL:BT089412 | UniProt:C6SW69 |
EnsemblPlantsGene:GLYMA_19G072000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0045040 | InterPro:IPR011990 |
EnsemblPlants:KRG94268 | ProteinID:KRG94268 | ProteinID:KRG94268.1 | PFAM:PD102047 | PFAM:PF06552 | PANTHER:PTHR32409 |
SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0001B14DF7 | SEG:seg |
Description
hypothetical protein
Coordinates
chr19:+:25201807..25206532
Molecular Weight (calculated)
23237.3 Da
IEP (calculated)
6.033
GRAVY (calculated)
-0.537
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQQSEFDR LLFFEHARKA AEAEYEKNPL DADNLTRWGG ALLELSQFQS FPESKKMTQE AVSKLEEALA VNPKKHDTLW CLGNAHTSQA FLIPDQEEAK
101: VYFDKAAVYF QQAVDEDPSN ELYRKSLEVA AKAPELHVEI HKQGFGQQQQ AAATAGSSTS ASGTKTQKKK KSSDLKYDIF GWIILAVGIV AWVGFAKSNL
201: PPPPPSPPR
101: VYFDKAAVYF QQAVDEDPSN ELYRKSLEVA AKAPELHVEI HKQGFGQQQQ AAATAGSSTS ASGTKTQKKK KSSDLKYDIF GWIILAVGIV AWVGFAKSNL
201: PPPPPSPPR
001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR
Arabidopsis Description
TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.