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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH57705 Soybean nucleus 91.87 91.43
VIT_14s0068g02030.t01 Wine grape cytosol 78.47 81.59
Solyc02g068130.2.1 Tomato plastid 72.73 74.51
PGSC0003DMT400052223 Potato cytosol 72.73 74.15
KRH31475 Soybean mitochondrion 66.99 69.65
Solyc02g094140.2.1 Tomato cytosol 66.51 68.14
KRG97423 Soybean cytosol 67.94 65.44
AT3G27080.1 Thale cress cytosol 57.89 59.9
Bra032980.1-P Field mustard cytosol 56.94 59.8
CDY34181 Canola cytosol 56.94 59.8
PGSC0003DMT400056939 Potato cytosol 47.85 59.17
AT5G40930.1 Thale cress cytosol 52.63 58.82
CDY28496 Canola cytosol 55.5 57.43
PGSC0003DMT400056935 Potato cytosol 51.67 56.25
EES01977 Sorghum cytosol 54.55 56.16
Os01t0921600-01 Rice mitochondrion, plastid 53.59 55.45
GSMUA_Achr8P00730_001 Banana plasma membrane, vacuole 20.1 55.26
Zm00001d012017_P002 Maize mitochondrion 53.11 54.95
Zm00001d042329_P001 Maize extracellular, mitochondrion, plasma membrane, plastid 53.11 54.68
TraesCS3A01G429800.1 Wheat cytosol 50.72 50.48
TraesCS3B01G467700.1 Wheat golgi 50.24 50.24
TraesCS3D01G425100.1 Wheat cytosol 50.24 50.24
Zm00001d040209_P001 Maize cytosol 30.62 39.26
AT3G27070.2 Thale cress plasma membrane 40.19 33.87
HORVU3Hr1G094550.2 Barley plastid 28.23 26.34
HORVU7Hr1G075380.6 Barley cytosol, plastid 17.7 22.56
Protein Annotations
Gene3D:1.25.40.10EntrezGene:100499753MapMan:23.2.1.5EMBL:ACUP02011915EMBL:BT089412UniProt:C6SW69
EnsemblPlantsGene:GLYMA_19G072000GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005742GO:GO:0006810GO:GO:0008150
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0045040InterPro:IPR011990
EnsemblPlants:KRG94268ProteinID:KRG94268ProteinID:KRG94268.1PFAM:PD102047PFAM:PF06552PANTHER:PTHR32409
SUPFAM:SSF48452TMHMM:TMhelixInterPro:TOM20_imprt_rcptInterPro:TPR-like_helical_dom_sfUniParc:UPI0001B14DF7SEG:seg
Description
hypothetical protein
Coordinates
chr19:+:25201807..25206532
Molecular Weight (calculated)
23237.3 Da
IEP (calculated)
6.033
GRAVY (calculated)
-0.537
Length
209 amino acids
Sequence
(BLAST)
001: MDLQQSEFDR LLFFEHARKA AEAEYEKNPL DADNLTRWGG ALLELSQFQS FPESKKMTQE AVSKLEEALA VNPKKHDTLW CLGNAHTSQA FLIPDQEEAK
101: VYFDKAAVYF QQAVDEDPSN ELYRKSLEVA AKAPELHVEI HKQGFGQQQQ AAATAGSSTS ASGTKTQKKK KSSDLKYDIF GWIILAVGIV AWVGFAKSNL
201: PPPPPSPPR
Best Arabidopsis Sequence Match ( AT3G27080.1 )
(BLAST)
001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR
Arabidopsis Description
TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.