CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97204
KRG97393
KRH06447
KRH08190
KRH28715
KRH31520
KRH47890
KRH68927
KRH69884
KRH76090
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31040.1	KRG97393	AT1G27300.1	21798944
AT2G31040.1	KRH31520	AT1G27300.1	21798944
AT2G31040.1	KRH76090	AT1G27300.1	21798944
AT2G31040.1	KRG97204	AT2G46550.1	21798944
AT2G31040.1	KRH06447	AT2G46550.1	21798944
AT2G31040.1	KRH47890	AT2G46550.1	21798944
AT2G31040.1	KRH68927	AT2G46550.1	21798944
AT2G31040.1	KRH08190	AT3G50910.1	21798944
AT2G31040.1	KRH28715	AT3G50910.1	21798944
AT2G31040.1	KRH69884	AT3G50910.1	21798944
AT2G31040.1	KRH76747	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g02170.t01	Wine grape	plastid	70.75	70.12
PGSC0003DMT400020320	Potato	plastid	66.27	65.49
Solyc12g010870.1.1	Tomato	plastid	66.27	64.91
Bra021688.1-P	Field mustard	plastid	62.99	62.43
CDX97768	Canola	plastid	62.99	62.43
CDY58985	Canola	plastid	62.09	61.54
GSMUA_Achr8P27290_001	Banana	plastid	62.99	60.81
AT2G31040.1	Thale cress	plastid	62.99	60.29
PGSC0003DMT400052662	Potato	plastid	57.91	57.4
Solyc07g055050.2.1	Tomato	plastid	57.91	57.4
TraesCS3B01G305300.1	Wheat	mitochondrion	58.21	53.87
Os01t0673800-01	Rice	mitochondrion	58.51	53.85
TraesCS3A01G271600.2	Wheat	mitochondrion	57.91	53.59
TraesCS3D01G271200.1	Wheat	mitochondrion	57.91	53.59
Zm00001d011569_P001	Maize	plastid	57.31	52.6
KXG33095	Sorghum	mitochondrion, plastid	57.01	51.9
CDX84806	Canola	extracellular, plasma membrane, plastid	17.01	48.72
HORVU1Hr1G066500.1	Barley	plastid	17.01	32.57

Protein Annotations

EMBL:ACUP02004059	EnsemblPlants:KRH55746	EnsemblPlantsGene:GLYMA_06G277600	EntrezGene:100807942	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR34118	PANTHER:PTHR34118:SF3	ProteinID:KRH55746	ProteinID:KRH55746.1
SEG:seg	UniParc:UPI00023C71BD	UniProt:I1KEN5	MapMan:1.1.9.3.1	:	:

Description

hypothetical protein

Coordinates

chr6:-:46945691..46951153

Molecular Weight (calculated)

36828.3 Da

IEP (calculated)

9.373

GRAVY (calculated)

-0.291

Length

335 amino acids

Sequence
(BLAST)

001: MALVSHVCVR CVATPTSPES PNSAPLPDPR QTKVLLPKKK PQKWSTGVAP GEYGGPPTTT KLRKYWGGDD EDPLASDDYM WNKEFMGRFQ KLIEEPNAQP
101: PPAKEEPSGF LSLNRVMSLD SLEVDLSKEL AAPVNHNAHL QIDAETNVTG SNRVRYKSAP TRREQEKWDR ATKAATGGSD VMFREIRQSR EDPKVLAAQA
201: EEQYNKLKRK LQIFTLGIGG VGLVSAYVSY SPEIAASFGA GFLGSLAYIR MLGSSVDSLR TDGAKGFVKG AIGQPRLLVP VVLVMVYNRW NAILVPEFGS
301: MHLELIPMLV GFFTYKIATF AQAIEEAITV ATRKT

Best Arabidopsis Sequence Match ( AT2G31040.1 )
(BLAST)

001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD

Arabidopsis Description

CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.