Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76747 | Soybean | plastid | 65.37 | 65.37 |
| KRH28715 | Soybean | cytosol | 60.09 | 63.9 |
| CDX77962 | Canola | nucleus, plastid | 45.87 | 48.19 |
| CDX73773 | Canola | cytosol | 45.18 | 47.82 |
| Bra036850.1-P | Field mustard | plastid | 45.41 | 47.71 |
| KRH69884 | Soybean | nucleus | 78.44 | 47.24 |
| Zm00001d020667_P001 | Maize | nucleus | 14.22 | 46.62 |
| CDX90677 | Canola | nucleus | 43.35 | 46.32 |
| Bra012880.1-P | Field mustard | nucleus | 43.12 | 46.08 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 52.52 | 45.98 |
| Bra037167.1-P | Field mustard | mitochondrion | 22.25 | 45.97 |
| CDY28989 | Canola | nucleus | 43.58 | 45.35 |
| AT3G50910.1 | Thale cress | cytosol | 44.27 | 43.18 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 40.14 | 42.68 |
| Solyc02g085000.2.1 | Tomato | nucleus | 43.58 | 41.13 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 38.99 | 40.87 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 36.7 | 40.61 |
| CDY18608 | Canola | nucleus | 32.8 | 39.39 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 42.66 | 38.67 |
| AT5G66480.1 | Thale cress | plastid | 39.22 | 38.51 |
| CDY67893 | Canola | nucleus | 30.28 | 38.26 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 38.76 | 37.64 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 38.99 | 37.61 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 38.76 | 37.22 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 38.76 | 36.9 |
| Os02t0704600-01 | Rice | nucleus | 38.3 | 36.62 |
| OQU78405 | Sorghum | nucleus | 35.32 | 36.15 |
| OQU85551 | Sorghum | cytosol, plastid | 37.16 | 35.76 |
| Zm00001d038964_P001 | Maize | nucleus | 33.95 | 34.82 |
| Zm00001d017768_P006 | Maize | cytosol | 37.61 | 34.53 |
| Zm00001d051562_P001 | Maize | plastid | 34.63 | 34.24 |
Protein Annotations
| EMBL:ACUP02010149 | EnsemblPlants:KRH08190 | EnsemblPlantsGene:GLYMA_16G135000 | EntrezGene:100792591 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR35490 | ProteinID:KRH08188.1 | ProteinID:KRH08189.1 | ProteinID:KRH08190 |
| ProteinID:KRH08190.1 | ProteinID:KRH08191.1 | ProteinID:KRH08192.1 | ProteinID:KRH08193.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000233F1CC | UniProt:K7MH66 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr16:-:29248080..29253429
Molecular Weight (calculated)
48736.9 Da
IEP (calculated)
5.029
GRAVY (calculated)
-0.712
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTFTAIAFD RLIEPGASKP AYKSAPVPMP VPKKIERRTS EPTIRKKPRP RPQLKPALYA TPEVTPLPDA PSSFPPSPYI INHKRRGPRL LKSYSEANVQ
101: AKQENLDNEN ANVKSNDGVI TSLDGDLQVT FTSIEPVKEE QVNGVHDTDL SSSSNNKGDL GEAHRESESS GILNGSHLDK VVALNLEREG ESEDFFDPHD
201: SMSLKSCTDG EDNTGTDQAL KFSAAGGEFF DAWEELSSDG GTQNSHRDIE AELREIRLSL LMEIEKRKQV EETLDSMQSH WERLGQRLSH IGIVLPSDLT
301: AEGGQLSSDP MEDVCQQLYI TRFISNTIGR GIARAEAEIE MEAQLQSKNF EIARLLERLH CYETMNREMS QRNQEAVEMA RRERQRRTRR QRWIWGSVTT
401: AIAVGTAAIA WSYLPVGRGS TFSVHDQVPE HDDAAN
101: AKQENLDNEN ANVKSNDGVI TSLDGDLQVT FTSIEPVKEE QVNGVHDTDL SSSSNNKGDL GEAHRESESS GILNGSHLDK VVALNLEREG ESEDFFDPHD
201: SMSLKSCTDG EDNTGTDQAL KFSAAGGEFF DAWEELSSDG GTQNSHRDIE AELREIRLSL LMEIEKRKQV EETLDSMQSH WERLGQRLSH IGIVLPSDLT
301: AEGGQLSSDP MEDVCQQLYI TRFISNTIGR GIARAEAEIE MEAQLQSKNF EIARLLERLH CYETMNREMS QRNQEAVEMA RRERQRRTRR QRWIWGSVTT
401: AIAVGTAAIA WSYLPVGRGS TFSVHDQVPE HDDAAN
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.