CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88877
KRG92440
KRG97263
KRG97647
KRG97711
KRG98973
KRG99305
KRH00851
KRH01966
KRH03247
KRH03966
KRH04275
KRH06335
KRH11576
KRH14870
KRH14933
KRH25249
KRH28216
KRH30315
KRH30413
KRH31163
KRH31225
KRH34357
KRH36588
KRH40381
KRH47754
KRH51187
KRH54345
KRH57111
KRH57236
KRH57556
KRH63594
KRH66641
KRH68981
KRH71094
KRH72403
KRH73205
KRH73215
KRH75261
KRH75571
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	KRG88877	AT1G01050.1	21798944
AT5G65683.1	KRG97263	AT1G01050.1	21798944
AT5G65683.1	KRG98973	AT1G01050.1	21798944
AT5G65683.1	KRG99305	AT1G01050.1	21798944
AT5G65683.1	KRH06335	AT1G01050.1	21798944
AT5G65683.1	KRH47754	AT1G01050.1	21798944
AT5G65683.1	KRH68981	AT1G01050.1	21798944
AT5G65683.1	KRH72403	AT1G01050.1	21798944
AT5G65683.1	KRH00851	AT1G01510.1	21798944
AT5G65683.1	KRH40381	AT1G01510.1	21798944
AT5G65683.1	KRH30315	AT2G44950.1	21798944
AT5G65683.1	KRH75261	AT2G44950.1	21798944
AT5G65683.1	KRH25249	AT3G03000.1	21798944
AT5G65683.1	KRH30413	AT3G03000.1	21798944
AT5G65683.1	KRG97711	AT3G08530.1	21798944
AT5G65683.1	KRH14933	AT3G08530.1	21798944
AT5G65683.1	KRH31163	AT3G08530.1	21798944
AT5G65683.1	KRH73205	AT3G08530.1	21798944
AT5G65683.1	KRG92440	AT3G22960.1	21798944
AT5G65683.1	KRH34357	AT3G22960.1	21798944
AT5G65683.1	KRH71094	AT3G24140.1	21798944
AT5G65683.1	KRH75571	AT3G24140.1	21798944
AT5G65683.1	KRH03966	AT3G48550.1	21798944
AT5G65683.1	KRH57236	AT3G48550.1	21798944
AT5G65683.1	KRH03247	AT3G54170.1	21798944
AT5G65683.1	KRH54345	AT3G54170.1	21798944
AT5G65683.1	KRH57111	AT3G54170.1	21798944
AT5G65683.1	KRH63594	AT3G54170.1	21798944
AT5G65683.1	KRG97647	AT3G56270.1	21798944
AT5G65683.1	KRH14870	AT3G56270.1	21798944
AT5G65683.1	KRH31225	AT3G56270.1	21798944
AT5G65683.1	KRH73215	AT3G56270.1	21798944
AT5G65683.1	KRH01966	AT4G17220.1	21798944
AT5G65683.1	KRH11576	AT4G17220.1	21798944
AT5G65683.1	KRH36588	AT4G17220.1	21798944
AT5G65683.1	KRH51187	AT4G17220.1	21798944
AT5G65683.1	KRH04275	AT4G17680.1	21798944
AT5G65683.1	KRH28216	AT4G17680.1	21798944
AT5G65683.1	KRH57556	AT4G17680.1	21798944
AT5G65683.1	KRH77271	AT4G17680.1	21798944
AT5G65683.1	KRH66641	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39527	Soybean	extracellular, golgi	68.68	86.32
VIT_07s0205g00030.t01	Wine grape	nucleus	54.71	56.71
KRH45468	Soybean	cytosol, peroxisome	32.5	54.84
PGSC0003DMT400078676	Potato	plastid	56.47	54.01
Solyc02g091710.2.1	Tomato	plastid	56.91	53.9
KRH75634	Soybean	nucleus	49.26	51.7
CDY25618	Canola	nucleus, peroxisome, plastid	48.09	49.4
Bra030218.1-P	Field mustard	nucleus	48.68	49.26
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	48.68	48.46
CDX89500	Canola	cytosol, peroxisome, plastid	47.79	48.29
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	48.38	48.03
CDY31616	Canola	nucleus	47.94	47.45
KRH45469	Soybean	nucleus	12.06	46.33
Bra017859.1-P	Field mustard	plastid	42.94	46.2
AT4G37890.1	Thale cress	nucleus	50.15	46.14
CDY52535	Canola	plastid	47.21	45.21
CDY08765	Canola	plastid	46.91	45.06
Bra031849.1-P	Field mustard	plastid	46.91	45.06
KRH72527	Soybean	nucleus	42.94	44.85
Bra024408.1-P	Field mustard	plastid	46.62	44.77
CDY45614	Canola	plastid	46.62	44.52
AT5G65683.1	Thale cress	peroxisome, plastid	46.91	44.49
KRH16916	Soybean	nucleus	43.97	44.36
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	42.5	41.94
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	44.12	40.98
GSMUA_Achr5P14740_001	Banana	mitochondrion	41.47	40.75
GSMUA_Achr4P22090_001	Banana	nucleus	42.65	40.56
GSMUA_Achr7P01890_001	Banana	mitochondrion	42.35	40.34
CDY37838	Canola	plastid	29.12	39.6
Zm00001d024940_P001	Maize	peroxisome	42.65	39.35
Zm00001d004553_P001	Maize	peroxisome	42.65	38.67
TraesCS2A01G045100.1	Wheat	peroxisome	43.09	38.55
TraesCS2D01G043700.1	Wheat	peroxisome	42.79	38.14
TraesCS2B01G057300.1	Wheat	peroxisome	42.94	37.92
OQU81040	Sorghum	peroxisome	37.5	35.66
KRH36665	Soybean	nucleus	17.94	22.18
KRH51230	Soybean	nucleus	16.76	22.01
KRH11654	Soybean	nucleus, plastid	17.79	21.88

Protein Annotations

EntrezGene:100794888	MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EMBL:ACUP02000026	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G019300	UniProt:I1J4W4	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
EnsemblPlants:KRH74431	ProteinID:KRH74431	ProteinID:KRH74431.1	PFAM:PF00092	PFAM:PF17123	PFscan:PS50089
PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI0002337A06	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:1865692..1868540

Molecular Weight (calculated)

75655.5 Da

IEP (calculated)

10.276

GRAVY (calculated)

-0.465

Length

680 amino acids

Sequence
(BLAST)

001: MVTGWRRAFC TSIPKDREPK VLTEKQQQQP QQQHCENTTT TTNNNNNNHS SKFGFFSNPS RPRCESQPSS TPSLRCQTTC SVPNSPKLQC KTKTPRLFHN
101: SNPSSPKSPS SFSLLKSTLR ISKSRCGICM QSVRSGQGTA IFTAECSHTF HFPCIVKKHP IVTCPVCNTS WKELPVLSIN HNNDKCDKRG FKVYNDDEPL
201: MSPTSLSRFN PIPESENEDE DEDDNIKTEF KGFNVNPLSN LPSSPAIRRN LELSLMPEVA IVAANRNYES YVVVLKLKPP HLTKPARRAP IDLVAVLDVG
301: GAMSGNKLRL MKNSMRQVIS SLRPTDRLSI VAFSAGSKRL LPLRRMTGGG QRSARRIVDA LAAIDRTREG TPVKNDAVKK AAKVLEDRRE KNVVASIVVL
401: SDIKDSHAGI SIHKPSLVST TRLTHLEVPV HAVRLGESPH ALSDDALAKF VGGLLNVVAQ DVRIQLEVVS RSRAVEIAGV YSFSGRPVPL GSSGWIRLGD
501: LYVEEEIELL VELKVPAASA GSHHVLTVRS SYRDPLTREP LNPVEQAMLV PRPHAVRSSC ARIERLRNFH VTARAVAESS RLAEHNDLTG AHQLLSSARA
601: LLLQSSEPDE EFLRWLEAEQ AELQRRRQRQ TLRNSRVEEK AEPLTPTSAW RAAERLAKVA IMRKSMNRVS DLHGFENARF

Best Arabidopsis Sequence Match ( AT4G37890.2 )
(BLAST)

001: MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP
101: LSFLSVSSSS STPSSPKSPA SFSLLKSKLC FTKSSISSSK CGICLQSAKA GRGTAIFTAE CSHTFHFPCV ASRAGDRNLL SDCPVCGASW RETSLLPLSL
201: SSSLHESGSE SDSKIRESKN NNKSLRVYND DEPLISSPIS RTGFNTIPES NEDEEEEDND DGEFKGFYVN TPSPLTTKKM LTDSVTGHVD VKLSSEAAIV
301: AVGRGNETYS VLMKIKSPSL PTARRSPVDL VTVIDVSGGN IEMVKRAMRQ VISSLRETDR LSMVSFSSSS KRLTPLRRMT ANGRRLARRI VDDISGDGDG
401: MSVNDAVKKA AKVIEDRRQK NLFTTIFVLT DRNRNSAHQA QLAQPDFVTS TRFSHLEIPT HTIWLGACNH ALPEDVFAKR IKSLLSLSVQ DLTLNLGLVS
501: GSGQGKVTSV YSLSGRPVWL GSGLIRLGDM YGDEEREVLV ELKSPSSSRS QRIMTVRSRH VDPTTQEIKN YEDRALMIPR PTTVRSSDPS IARLRNLHVS
601: TRAVAESRRL VEVNDYSGAE RMLTSARALL VQYGLSSSDS CLRGLEAELA DLNRLRGRHV AVKSPEPVVQ KSEPLTPTSA WRAAERLAKV AIMRKHMNRV
701: SDLHGFENAR F

Arabidopsis Description

EDA40Probable E3 ubiquitin-protein ligase EDA40 [Source:UniProtKB/Swiss-Prot;Acc:F4JSV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.