Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G043700.1 | Wheat | peroxisome | 97.63 | 97.25 |
| TraesCS2B01G057300.1 | Wheat | peroxisome | 95.66 | 94.42 |
| Os04t0101800-01 | Rice | cytosol, mitochondrion, peroxisome, plastid | 67.63 | 74.6 |
| Zm00001d024940_P001 | Maize | peroxisome | 71.32 | 73.54 |
| Zm00001d004553_P001 | Maize | peroxisome | 72.24 | 73.2 |
| OQU81040 | Sorghum | peroxisome | 67.11 | 71.33 |
| GSMUA_Achr4P20870_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 50.92 | 52.87 |
| GSMUA_Achr4P22090_001 | Banana | nucleus | 49.74 | 52.87 |
| GSMUA_Achr7P01890_001 | Banana | mitochondrion | 48.82 | 51.96 |
| GSMUA_Achr5P14740_001 | Banana | mitochondrion | 46.05 | 50.58 |
| VIT_07s0205g00030.t01 | Wine grape | nucleus | 43.29 | 50.15 |
| PGSC0003DMT400078676 | Potato | plastid | 42.24 | 45.15 |
| VIT_18s0001g08100.t01 | Wine grape | plastid | 44.87 | 45.05 |
| Solyc02g091710.2.1 | Tomato | plastid | 42.5 | 44.99 |
| Solyc04g076860.2.1 | Tomato | nucleus | 44.08 | 44.67 |
| KRH45468 | Soybean | cytosol, peroxisome | 23.55 | 44.42 |
| PGSC0003DMT400016355 | Potato | nucleus | 43.42 | 43.77 |
| KRH39527 | Soybean | extracellular, golgi | 30.79 | 43.25 |
| KRH74431 | Soybean | mitochondrion | 38.55 | 43.09 |
| CDY28148 | Canola | plastid | 37.63 | 42.12 |
| AT5G49665.1 | Thale cress | plastid | 40.26 | 41.35 |
| KRH75634 | Soybean | nucleus | 35.13 | 41.2 |
| KRH72527 | Soybean | nucleus | 35.26 | 41.17 |
| Bra017859.1-P | Field mustard | plastid | 34.21 | 41.14 |
| CDY25618 | Canola | nucleus, peroxisome, plastid | 35.79 | 41.09 |
| Bra030218.1-P | Field mustard | nucleus | 36.32 | 41.07 |
| CDY31616 | Canola | nucleus | 36.45 | 40.32 |
| CDX72660 | Canola | cytosol, nucleus, peroxisome, plastid | 36.18 | 40.15 |
| CDX89500 | Canola | cytosol, peroxisome, plastid | 35.53 | 40.12 |
| Bra040498.1-P | Field mustard | plastid | 38.42 | 40.11 |
| KRH16916 | Soybean | nucleus | 35.39 | 39.91 |
| AT2G22680.1 | Thale cress | cytosol, peroxisome, plastid | 35.66 | 39.68 |
| CDY45010 | Canola | mitochondrion, peroxisome | 37.76 | 39.42 |
| Bra024408.1-P | Field mustard | plastid | 36.05 | 38.7 |
| CDY08765 | Canola | plastid | 35.92 | 38.56 |
| Bra031849.1-P | Field mustard | plastid | 35.0 | 37.57 |
| CDY45614 | Canola | plastid | 34.87 | 37.22 |
| CDY52535 | Canola | plastid | 34.74 | 37.18 |
| AT4G37890.1 | Thale cress | nucleus | 35.92 | 36.94 |
| AT5G65683.1 | Thale cress | peroxisome, plastid | 33.82 | 35.84 |
| CDY37838 | Canola | plastid | 22.5 | 34.2 |
| KRH45469 | Soybean | nucleus | 7.63 | 32.77 |
| TraesCS5A01G284900.1 | Wheat | cytosol, mitochondrion, plastid | 10.39 | 27.43 |
| TraesCS2A01G358400.2 | Wheat | cytosol, nucleus, peroxisome | 23.03 | 26.8 |
| TraesCS5A01G359200.1 | Wheat | cytosol, peroxisome, plastid | 17.89 | 25.95 |
| TraesCS6A01G227300.1 | Wheat | mitochondrion | 23.95 | 25.6 |
| TraesCS2A01G364100.2 | Wheat | cytosol, mitochondrion | 23.42 | 25.57 |
| TraesCS3A01G393700.1 | Wheat | cytosol | 17.5 | 25.24 |
| TraesCS6A01G375500.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 23.95 | 24.76 |
| TraesCS7A01G423300.1 | Wheat | cytosol | 19.21 | 24.66 |
| TraesCS5A01G513000.1 | Wheat | cytosol | 23.29 | 23.92 |
| TraesCS5A01G512800.2 | Wheat | mitochondrion | 22.24 | 23.9 |
| TraesCS5A01G178300.1 | Wheat | mitochondrion | 16.45 | 23.72 |
| TraesCS5A01G513100.1 | Wheat | cytosol, plastid | 15.26 | 23.48 |
| TraesCS1A01G146700.1 | Wheat | mitochondrion | 18.95 | 22.19 |
| TraesCS1A01G421500.1 | Wheat | plastid | 18.03 | 21.78 |
| TraesCS4A01G484700.1 | Wheat | cytosol, unclear | 13.68 | 19.85 |
| TraesCS5A01G011500.1 | Wheat | cytosol | 13.03 | 19.8 |
| TraesCS7A01G010300.1 | Wheat | nucleus, unclear | 13.29 | 19.27 |
| TraesCS5A01G011700.1 | Wheat | cytosol | 13.03 | 18.82 |
| TraesCS7A01G426800.1 | Wheat | cytosol, peroxisome, plasma membrane | 12.24 | 12.83 |
| TraesCS6A01G006500.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 10.92 | 11.74 |
| TraesCS5A01G011800.1 | Wheat | plastid | 10.92 | 9.78 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G045100.1 | EnsemblPlantsGene:TraesCS2A01G045100 | Gene3D:3.30.40.10 | Gene3D:3.40.50.410 | InterPro:IPR001841 | InterPro:IPR002035 |
| InterPro:IPR013083 | InterPro:IPR036465 | InterPro:VWF_A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:vWFA_dom_sf |
| PANTHER:PTHR10579 | PANTHER:PTHR10579:SF55 | PFAM:PF13519 | PFAM:PF17123 | PFscan:PS50089 | PFscan:PS50234 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | MapMan:26.3.1.6 | : |
Description
No Description!
Coordinates
chr2A:-:17738199..17741815
Molecular Weight (calculated)
79921.9 Da
IEP (calculated)
10.282
GRAVY (calculated)
-0.372
Length
760 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTGWRRALC TSVSRDDSSD GGGSGSAKRR PPPARGDAAA PATPRKLAFF SGMGGGGGNP SAPALRCRTK PTAEPESVAP VTPPQPASAP VSARKRVPLL
101: QAISAPSSPR SPSRFALFKA SILPTKARCG VCTRGVKNGG GAAVFTAECS HSFHFPCIAA HARAAASGAL CCPVCSAPWR QAPFLASLRL HLDVDGSPHR
201: KRRTSDDSRK APPVTTKAAG VPKVYDDDEP LLAPKSAANG SGFNPIPEAD EDDDEGDAAG TEGEFRGFFP HPPRARTGLA VTVAPEAALV SSGRRHGKYV
301: VVVKVKAPGL RSSASRRAPI DLVTVLDVSQ GMMGEKLQML KRGMRLVIAS LGPADRLSIV AFSGAAKRLM PLRRMSRQGQ RSARQIVDRL VVCAAAQGQE
401: QAQSACAGDA LRKATKVLED RRDRNPVATV MLLSDTQQQQ DSRKHGDHHH SLRRPQAAPA AATRFTHVEI PIAGPADDAP ARSPLAPKEE HLESSAPAEH
501: AFAKCLGGLV SVVMQEVHLE LAFPTGEITA VYSCGAGQQA VALAGGAGGN GGSALSVRLG EMYAEEEREL LVELRAPLGA HPHSLSVRCA YRDPASQETV
601: RGAEQPLLLP PLHDGGGNSS TSSQQRLHDL FVATRAVAES RRLAELSDFS TATHLLSSAR RLVLQSPPTQ QQQDLLGGLD TELSDMRWRR GQQQPPTPTS
701: RSATPSGTPR ASSGGGGGGA GEPLTPTSAW RAAEQLAKVA IMRKSMNRVS DLHGFENARF
101: QAISAPSSPR SPSRFALFKA SILPTKARCG VCTRGVKNGG GAAVFTAECS HSFHFPCIAA HARAAASGAL CCPVCSAPWR QAPFLASLRL HLDVDGSPHR
201: KRRTSDDSRK APPVTTKAAG VPKVYDDDEP LLAPKSAANG SGFNPIPEAD EDDDEGDAAG TEGEFRGFFP HPPRARTGLA VTVAPEAALV SSGRRHGKYV
301: VVVKVKAPGL RSSASRRAPI DLVTVLDVSQ GMMGEKLQML KRGMRLVIAS LGPADRLSIV AFSGAAKRLM PLRRMSRQGQ RSARQIVDRL VVCAAAQGQE
401: QAQSACAGDA LRKATKVLED RRDRNPVATV MLLSDTQQQQ DSRKHGDHHH SLRRPQAAPA AATRFTHVEI PIAGPADDAP ARSPLAPKEE HLESSAPAEH
501: AFAKCLGGLV SVVMQEVHLE LAFPTGEITA VYSCGAGQQA VALAGGAGGN GGSALSVRLG EMYAEEEREL LVELRAPLGA HPHSLSVRCA YRDPASQETV
601: RGAEQPLLLP PLHDGGGNSS TSSQQRLHDL FVATRAVAES RRLAELSDFS TATHLLSSAR RLVLQSPPTQ QQQDLLGGLD TELSDMRWRR GQQQPPTPTS
701: RSATPSGTPR ASSGGGGGGA GEPLTPTSAW RAAEQLAKVA IMRKSMNRVS DLHGFENARF
001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
Arabidopsis Description
WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.