Factsheet for Bra017859.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31616	Canola	nucleus	94.62	87.05
AT4G37890.1	Thale cress	nucleus	78.48	67.12
Bra030218.1-P	Field mustard	nucleus	61.39	57.74
KRH45468	Soybean	cytosol, peroxisome	30.06	47.15
KRH39527	Soybean	extracellular, golgi	39.87	46.58
VIT_07s0205g00030.t01	Wine grape	nucleus	45.89	44.21
KRH74431	Soybean	mitochondrion	46.2	42.94
PGSC0003DMT400078676	Potato	plastid	47.31	42.05
Solyc02g091710.2.1	Tomato	plastid	47.47	41.78
KRH75634	Soybean	nucleus	41.3	40.28
Bra024408.1-P	Field mustard	plastid	44.94	40.11
Bra031849.1-P	Field mustard	plastid	44.78	39.97
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	39.08	35.85
Bra040498.1-P	Field mustard	plastid	40.98	35.58
TraesCS2A01G045100.1	Wheat	peroxisome	41.14	34.21
TraesCS2D01G043700.1	Wheat	peroxisome	41.14	34.08
GSMUA_Achr5P14740_001	Banana	mitochondrion	37.18	33.96
Zm00001d024940_P001	Maize	peroxisome	39.08	33.51
TraesCS2B01G057300.1	Wheat	peroxisome	40.82	33.51
Zm00001d004553_P001	Maize	peroxisome	39.4	33.2
GSMUA_Achr7P01890_001	Banana	mitochondrion	37.03	32.77
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	37.66	32.51
GSMUA_Achr4P22090_001	Banana	nucleus	36.71	32.45
OQU81040	Sorghum	peroxisome	35.28	31.19
KRH45469	Soybean	nucleus	7.28	25.99
Bra002456.1-P	Field mustard	mitochondrion, plastid	27.06	24.43
Bra020234.1-P	Field mustard	mitochondrion	26.42	24.03
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	23.1	23.9
Bra005066.1-P	Field mustard	mitochondrion	24.53	23.63
Bra024913.1-P	Field mustard	mitochondrion	16.3	19.73
Bra018663.1-P	Field mustard	nucleus	24.37	11.68

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EnsemblPlantsGene:Bra017859	EnsemblPlants:Bra017859.1	EnsemblPlants:Bra017859.1-P
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0007275	GO:GO:0008150	GO:GO:0009506
GO:GO:0009987	GO:GO:0010197	GO:GO:0016020	GO:GO:0016043	GO:GO:0030154	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4DMX2	PFAM:PF13768	PFAM:PF17123
PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI0002540D66	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

AT4G37890 (E=4e-216) EDA40 | EDA40 (embryo sac development arrest 40); protein binding / ubiquitin-protein ligase/ zinc ion binding

Coordinates

chrA03:-:31045571..31047469

Molecular Weight (calculated)

68806.0 Da

IEP (calculated)

9.943

GRAVY (calculated)

-0.279

Length

632 amino acids

Sequence
(BLAST)

001: MTSGDVTPTA TTPRRNRSPL SLLSLSSPSS PASFSLLKAK LCFTKVSTKL NSKYVFVTIK TASSIVSTLC FEQSNGSRCG ICLQSAKAGR GTAIFTAECS
101: HTFHFPCVAS RAGDLTLLAA CPVCGASWRD TSLLPLHDLK SPESESESRT RESSSNKSLR VYNDDEPLIS SPISPAGFNT ILESDENEDD EEEDNGGFKG
201: FFVNTPLTSN KRLTDSVDVK LSSEAAVVAV GRGSYETYSV LMKIKSPPLP ASRPRPPVDL VTVLDVGGSR VETVRRAMRL VISSLRENDR LSMVSFSSSS
301: KRLSPLRRMT ANGRRVARRI LDDISGDGEG MSVKDAVKKA AKVIEDRRQR NLFATIFVLT DSAHQAQSDF VSSTRVSLLE IPTHTLYLGA CTKVIPEDVF
401: AKRIKGLLSV SVQDLTLQLG SGQGEITSVY SLSGRPIWLG SGLIRLGDMY GEEERQVLVE LKSPASGKSH RIMTVRSRHV DPTTQETRDS DDRALLIPRP
501: TAARSSSNTN IARLRNVHVS TRAVAESRRL IEASDYSGAE RMLTSARALL VQYGLSSGDA CLRGLDTEIA DLNRVRGSRH VAVKSPVPVA QKTEPLTPTS
601: AWRAAERLAK VAIMKKHMNR VSDLHGFENA RF

Best Arabidopsis Sequence Match ( AT4G37890.1 )
(BLAST)

001: MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP
101: LSFLSVSSSS STPSSPKSPA SFSLLKSKLC FTKVRILNRN NQVNIFKNNS KLTFLRLCYE QSSISSSKCG ICLQSAKAGR GTAIFTAECS HTFHFPCVAS
201: RAGDRNLLSD CPVCGASWRE TSLLPLSLSS SLHESGSESD SKIRESKNNN KSLRVYNDDE PLISSPISRT GFNTIPESNE DEEEEDNDDG EFKGFYVNTP
301: SPLTTKKMLT DSVTGHVDVK LSSEAAIVAV GRGNETYSVL MKIKSPSLPT ARRSPVDLVT VIDVSGGNIE MVKRAMRQVI SSLRETDRLS MVSFSSSSKR
401: LTPLRRMTAN GRRLARRIVD DISGDGDGMS VNDAVKKAAK VIEDRRQKNL FTTIFVLTDR NRNSAHQAQL AQPDFVTSTR FSHLEIPTHT IWLGACNHAL
501: PEDVFAKRIK SLLSLSVQDL TLNLGLVSGS GQGKVTSVYS LSGRPVWLGS GLIRLGDMYG DEEREVLVEL KSPSSSRSQR IMTVRSRHVD PTTQEIKNYE
601: DRALMIPRPT TVRSSDPSIA RLRNLHVSTR AVAESRRLVE VNDYSGAERM LTSARALLVQ YGLSSSDSCL RGLEAELADL NRLRGRHVAV KSPEPVVQKS
701: EPLTPTSAWR AAERLAKVAI MRKHMNRVSD LHGFENARF

Arabidopsis Description

EDA40Probable E3 ubiquitin-protein ligase EDA40 [Source:UniProtKB/Swiss-Prot;Acc:F4JSV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.