Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024940_P001 | Maize | peroxisome | 93.07 | 94.71 |
| OQU81040 | Sorghum | peroxisome | 83.07 | 87.13 |
| Os04t0101800-01 | Rice | cytosol, mitochondrion, peroxisome, plastid | 69.73 | 75.91 |
| TraesCS2A01G045100.1 | Wheat | peroxisome | 73.2 | 72.24 |
| TraesCS2D01G043700.1 | Wheat | peroxisome | 72.27 | 71.04 |
| TraesCS2B01G057300.1 | Wheat | peroxisome | 72.4 | 70.52 |
| GSMUA_Achr4P22090_001 | Banana | nucleus | 50.4 | 52.87 |
| GSMUA_Achr4P20870_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 50.93 | 52.19 |
| GSMUA_Achr7P01890_001 | Banana | mitochondrion | 49.47 | 51.96 |
| GSMUA_Achr5P14740_001 | Banana | mitochondrion | 47.07 | 51.01 |
| VIT_07s0205g00030.t01 | Wine grape | nucleus | 43.33 | 49.54 |
| Solyc04g076860.2.1 | Tomato | nucleus | 45.73 | 45.73 |
| VIT_18s0001g08100.t01 | Wine grape | plastid | 46.13 | 45.71 |
| PGSC0003DMT400016355 | Potato | nucleus | 45.2 | 44.96 |
| PGSC0003DMT400078676 | Potato | plastid | 42.53 | 44.87 |
| Solyc02g091710.2.1 | Tomato | plastid | 42.67 | 44.57 |
| KRH45468 | Soybean | cytosol, peroxisome | 23.07 | 42.93 |
| KRH74431 | Soybean | mitochondrion | 38.67 | 42.65 |
| CDY28148 | Canola | plastid | 38.53 | 42.56 |
| KRH39527 | Soybean | extracellular, golgi | 30.4 | 42.14 |
| AT5G49665.1 | Thale cress | plastid | 41.47 | 42.03 |
| KRH72527 | Soybean | nucleus | 36.13 | 41.63 |
| Bra040498.1-P | Field mustard | plastid | 39.33 | 40.52 |
| KRH75634 | Soybean | nucleus | 34.8 | 40.28 |
| KRH16916 | Soybean | nucleus | 36.13 | 40.21 |
| CDY25618 | Canola | nucleus, peroxisome, plastid | 35.33 | 40.03 |
| Bra030218.1-P | Field mustard | nucleus | 35.87 | 40.03 |
| CDY45010 | Canola | mitochondrion, peroxisome | 38.53 | 39.7 |
| Bra017859.1-P | Field mustard | plastid | 33.2 | 39.4 |
| CDX72660 | Canola | cytosol, nucleus, peroxisome, plastid | 35.87 | 39.27 |
| CDY31616 | Canola | nucleus | 35.87 | 39.16 |
| CDX89500 | Canola | cytosol, peroxisome, plastid | 35.07 | 39.08 |
| AT2G22680.1 | Thale cress | cytosol, peroxisome, plastid | 35.33 | 38.8 |
| Bra024408.1-P | Field mustard | plastid | 34.8 | 36.86 |
| CDY08765 | Canola | plastid | 34.8 | 36.86 |
| Bra031849.1-P | Field mustard | plastid | 34.27 | 36.3 |
| CDY45614 | Canola | plastid | 34.13 | 35.96 |
| CDY52535 | Canola | plastid | 34.0 | 35.92 |
| AT4G37890.1 | Thale cress | nucleus | 35.33 | 35.86 |
| AT5G65683.1 | Thale cress | peroxisome, plastid | 33.07 | 34.59 |
| KRH45469 | Soybean | nucleus | 7.87 | 33.33 |
| CDY37838 | Canola | plastid | 22.0 | 33.0 |
| Zm00001d018428_P001 | Maize | mitochondrion | 26.13 | 26.52 |
| Zm00001d032750_P001 | Maize | plastid | 22.13 | 26.43 |
| Zm00001d051977_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 25.6 | 26.27 |
| Zm00001d014084_P001 | Maize | mitochondrion | 24.0 | 25.6 |
| Zm00001d051119_P001 | Maize | nucleus | 23.47 | 25.58 |
| Zm00001d017247_P002 | Maize | mitochondrion | 23.33 | 25.14 |
| Zm00001d007190_P001 | Maize | cytosol | 16.67 | 24.95 |
| Zm00001d008553_P001 | Maize | cytosol | 16.53 | 24.85 |
| Zm00001d025825_P001 | Maize | mitochondrion | 22.8 | 24.29 |
| Zm00001d027622_P001 | Maize | mitochondrion | 22.27 | 24.13 |
| Zm00001d020013_P001 | Maize | cytosol | 16.4 | 23.38 |
| Zm00001d032753_P001 | Maize | cytosol | 19.6 | 22.9 |
| Zm00001d027621_P001 | Maize | cytosol | 21.2 | 21.26 |
| Zm00001d024886_P002 | Maize | cytosol | 13.73 | 19.96 |
| Zm00001d024014_P001 | Maize | cytosol | 13.07 | 19.48 |
| Zm00001d051773_P001 | Maize | plasma membrane | 11.47 | 18.74 |
| Zm00001d036069_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 13.73 | 16.32 |
| Zm00001d045454_P001 | Maize | plasma membrane | 13.47 | 15.54 |
| Zm00001d036068_P001 | Maize | mitochondrion, plastid | 10.8 | 14.7 |
| Zm00001d035428_P001 | Maize | mitochondrion | 12.4 | 13.86 |
| Zm00001d036072_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 11.6 | 13.81 |
| Zm00001d036066_P001 | Maize | cytosol | 11.47 | 12.93 |
| Zm00001d045456_P001 | Maize | endoplasmic reticulum, plasma membrane | 9.87 | 12.29 |
| Zm00001d035434_P001 | Maize | cytosol | 6.8 | 11.11 |
Protein Annotations
| MapMan:26.3.1.6 | Gene3D:3.30.40.10 | Gene3D:3.40.50.410 | UniProt:A0A1D6EG40 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 | InterPro:IPR036465 | ProteinID:ONM19144.1 |
| PFAM:PF13519 | PFAM:PF17123 | PFscan:PS50089 | PFscan:PS50234 | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF55 |
| SMART:SM00184 | SMART:SM00249 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | UniParc:UPI0002217848 |
| InterPro:VWF_A | EnsemblPlantsGene:Zm00001d004553 | EnsemblPlants:Zm00001d004553_P001 | EnsemblPlants:Zm00001d004553_T001 | InterPro:Znf_PHD | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf | : | : | : |
Description
Zinc finger (C3HC4-type RING finger) family protein
Coordinates
chr2:+:117599896..117603633
Molecular Weight (calculated)
79654.8 Da
IEP (calculated)
9.968
GRAVY (calculated)
-0.332
Length
750 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMGWRRALC TSVQRDDDPD RDASTKKRRP QYDAPSPRGT AAGFFSAVKS AAAGGGAASG SGSNPSTPAL RCRTRPLQQP ADSAPVTPPS APAPARNHRV
101: PLMQALSAPV SPRSPSRFAL LKASLLPSKS RCGVCSRGVK SGGSSAVFTA ECSHAFHFPC IAAHARSSSA NGVLSCPVCA SPWRQAPFLA SLRLHCSFHD
201: DKHRGGGDGR KTPPPAKLYD DDEPLLAPKA AANGGGFNPI PEADEDDEEE QGAAEFRGFF PCPRSRTTSG LAITVAPEAA LVSSGRRHGK YVVAVKVKAP
301: GLRSSAAAPR RAPIDLVTVL DVSQGMMGEK LQMLKRGMRL VVASLGPADR LSIVAFSGAA KRLLPLRRMT RTGQRSARQI VDRLVVCAAA ATTATATQGQ
401: QSACMGDALR KATKVLEDRR DRNPVATVML LSDTQQQQQQ SAAPENSSRK QFGRPAVAPA TRFTHVEIPI GPGDPPPLVS ECEEEPPVEH AFAKCLGGLV
501: SVVMQEVHLE LAFPTGEITA VYSCGPGQQA VAISGGAGVS VRLGEMYAEE ERELLVEVRA PLGSHPHSLS VRCTYRDPAS QETVRGAVQP LLLPALHGER
601: ALSSSRRLHD LFVATRAVAE SRRLAELQDL GTAIHLLSSA RALVLQSPVT PQQHELVGSL DTELSDMRWR RGNSQHQHEE VVTPTSRSGR RRGDGDTTVT
701: VGTPRGSAGA GEALTPTSAW RAAEQLAKVA IMRKSMNRVS DLHGFENARF
101: PLMQALSAPV SPRSPSRFAL LKASLLPSKS RCGVCSRGVK SGGSSAVFTA ECSHAFHFPC IAAHARSSSA NGVLSCPVCA SPWRQAPFLA SLRLHCSFHD
201: DKHRGGGDGR KTPPPAKLYD DDEPLLAPKA AANGGGFNPI PEADEDDEEE QGAAEFRGFF PCPRSRTTSG LAITVAPEAA LVSSGRRHGK YVVAVKVKAP
301: GLRSSAAAPR RAPIDLVTVL DVSQGMMGEK LQMLKRGMRL VVASLGPADR LSIVAFSGAA KRLLPLRRMT RTGQRSARQI VDRLVVCAAA ATTATATQGQ
401: QSACMGDALR KATKVLEDRR DRNPVATVML LSDTQQQQQQ SAAPENSSRK QFGRPAVAPA TRFTHVEIPI GPGDPPPLVS ECEEEPPVEH AFAKCLGGLV
501: SVVMQEVHLE LAFPTGEITA VYSCGPGQQA VAISGGAGVS VRLGEMYAEE ERELLVEVRA PLGSHPHSLS VRCTYRDPAS QETVRGAVQP LLLPALHGER
601: ALSSSRRLHD LFVATRAVAE SRRLAELQDL GTAIHLLSSA RALVLQSPVT PQQHELVGSL DTELSDMRWR RGNSQHQHEE VVTPTSRSGR RRGDGDTTVT
701: VGTPRGSAGA GEALTPTSAW RAAEQLAKVA IMRKSMNRVS DLHGFENARF
001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
Arabidopsis Description
WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.