Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05709 | Sorghum | nucleus | 85.2 | 79.89 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 72.51 | 75.47 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 75.83 | 71.1 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 68.88 | 68.26 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 69.49 | 68.05 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 67.98 | 66.18 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 68.28 | 65.89 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 39.88 | 45.67 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 36.56 | 44.98 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 42.9 | 43.83 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 39.27 | 42.62 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 42.3 | 42.42 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 41.09 | 40.36 |
| Zm00001d047069_P001 | Maize | cytosol | 40.18 | 40.06 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 39.88 | 39.29 |
| Bra024967.1-P | Field mustard | plastid | 28.1 | 37.65 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 38.07 | 37.39 |
| KRH77271 | Soybean | plastid | 36.25 | 37.27 |
| CDY09609 | Canola | cytosol | 27.19 | 36.44 |
| Solyc06g061020.2.1 | Tomato | nucleus | 35.95 | 35.95 |
| KRH28216 | Soybean | nucleus | 35.65 | 35.87 |
| PGSC0003DMT400068387 | Potato | nucleus | 35.95 | 34.8 |
| Solyc08g077460.2.1 | Tomato | nucleus | 36.56 | 34.77 |
| PGSC0003DMT400004642 | Potato | nucleus | 36.25 | 34.68 |
| Solyc08g007120.2.1 | Tomato | nucleus | 34.44 | 34.44 |
| CDX77733 | Canola | nucleus | 31.12 | 34.33 |
| CDY33511 | Canola | nucleus | 31.42 | 34.32 |
| AT5G47050.1 | Thale cress | nucleus | 30.51 | 33.67 |
| AT1G32740.1 | Thale cress | nucleus | 31.72 | 33.65 |
| KRH04275 | Soybean | nucleus | 35.95 | 33.33 |
| CDY43447 | Canola | nucleus | 29.91 | 32.78 |
| Bra017511.1-P | Field mustard | nucleus | 29.91 | 32.78 |
| KRH57556 | Soybean | nucleus | 34.44 | 32.57 |
| Zm00001d010503_P001 | Maize | cytosol, mitochondrion | 12.69 | 32.56 |
| CDX90458 | Canola | cytosol | 29.0 | 31.58 |
| CDY03162 | Canola | cytosol | 30.51 | 31.37 |
| CDY37172 | Canola | cytosol | 28.4 | 31.13 |
| CDY51856 | Canola | cytosol | 28.4 | 31.02 |
| AT4G17680.1 | Thale cress | nucleus | 29.31 | 30.89 |
| PGSC0003DMT400052841 | Potato | nucleus | 32.02 | 30.37 |
| Zm00001d004743_P001 | Maize | plastid | 14.5 | 29.09 |
| Zm00001d026161_P001 | Maize | cytosol | 12.08 | 28.37 |
| Bra022093.1-P | Field mustard | nucleus | 17.52 | 26.36 |
| Bra012650.1-P | Field mustard | nucleus | 27.79 | 26.36 |
| Zm00001d025319_P001 | Maize | cytosol | 24.47 | 26.21 |
| Zm00001d016648_P001 | Maize | cytosol | 23.26 | 24.84 |
| Zm00001d003852_P001 | Maize | cytosol, nucleus, plastid | 23.87 | 23.94 |
| Zm00001d003850_P001 | Maize | extracellular | 23.87 | 23.65 |
| Zm00001d052640_P001 | Maize | cytosol, extracellular, nucleus | 21.15 | 23.65 |
| Zm00001d025310_P001 | Maize | cytosol | 22.66 | 23.36 |
| Zm00001d052639_P001 | Maize | extracellular | 22.96 | 22.49 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 22.05 | 22.12 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 22.36 | 20.79 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 20.24 | 20.36 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 20.54 | 20.18 |
| Zm00001d033419_P001 | Maize | plastid | 16.01 | 18.93 |
| Zm00001d003613_P002 | Maize | nucleus | 16.31 | 12.44 |
Protein Annotations
| EnsemblPlants:Zm00001d017649_P001 | EnsemblPlants:Zm00001d017649_T001 | EnsemblPlantsGene:Zm00001d017649 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF5 |
| PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | ProteinID:AQK73626.1 | SEG:seg | UniParc:UPI000220E638 |
| UniProt:A0A1D6HG76 | MapMan:35.2 | : | : | : | : |
Description
S-ribonuclease binding protein SBP1
Coordinates
chr5:-:203055160..203056830
Molecular Weight (calculated)
35533.0 Da
IEP (calculated)
8.158
GRAVY (calculated)
-0.392
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMPKPPQLA GVSPAAVYFS GGGASGNNRR KRAREAMAPP PAVKEDYVNL FALQQQQQQQ QQQSMPFANM ALFQNQNRVS SSPSPAATAL VSTGLRLAFD
101: EQQQHLLQQQ ESKQTNALRY SSPPSLFASV SDELAAQAKQ HEEEVDRFVR EQGEQLRRAV ADRLRRHNRA ILVKADQSAA RRLREKAAEA EREARRGAEL
201: EERLARLRGE AAAWQAKALS EQAAAVALHA QLQQAAAAAR ASVEELTAAA AAGDAGPAES SASAFVDPRR AGPPPDHACL ACRLRPASVV LLPCRHLSLC
301: GECFAAGDAD AAMPCPVCLC VRTGSVEAIL C
101: EQQQHLLQQQ ESKQTNALRY SSPPSLFASV SDELAAQAKQ HEEEVDRFVR EQGEQLRRAV ADRLRRHNRA ILVKADQSAA RRLREKAAEA EREARRGAEL
201: EERLARLRGE AAAWQAKALS EQAAAVALHA QLQQAAAAAR ASVEELTAAA AAGDAGPAES SASAFVDPRR AGPPPDHACL ACRLRPASVV LLPCRHLSLC
301: GECFAAGDAD AAMPCPVCLC VRTGSVEAIL C
001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.