CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67402
CDX67612
CDX68810
CDX68825
CDX68833
CDX69609
CDX70540
CDX72341
CDX72353
CDX73445
CDX73744
CDX74525
CDX74532
CDX75213
CDX75227
CDX75234
CDX77980
CDX78266
CDX78558
CDX81487
CDX81488
CDX81489
CDX85614
CDX87569
CDX88314
CDX90948
CDX91084
CDX96108
CDX97257
CDX99682
CDY00981
CDY01665
CDY01671
CDY01786
CDY01921
CDY04780
CDY07518
CDY08561
CDY12159
CDY12506
CDY12623
CDY13469
CDY13480
CDY16531
CDY20854
CDY21393
CDY23554
CDY24170
CDY24236
CDY25756
CDY32837
CDY36943
CDY43388
CDY52468
CDY52552
CDY54119
CDY58422
CDY60119
CDY61552
CDY61790
CDY61791
CDY64806
CDY67657
CDY71122

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17680.1	CDY04780	AT1G22840.1	21798944
AT4G17680.1	CDY12506	AT1G22840.1	21798944
AT4G17680.1	CDY21393	AT1G22840.1	21798944
AT4G17680.1	CDY25756	AT1G22840.1	21798944
AT4G17680.1	CDY16531	AT1G49850.1	21798944
AT4G17680.1	CDY20854	AT1G49850.1	21798944
AT4G17680.1	CDY32837	AT1G49850.1	21798944
AT4G17680.1	CDY61552	AT1G49850.1	21798944
AT4G17680.1	CDX96108	AT1G67170.1	21798944
AT4G17680.1	CDY01786	AT1G67170.1	21798944
AT4G17680.1	CDY12623	AT1G67170.1	21798944
AT4G17680.1	CDY54119	AT1G67170.1	21798944
AT4G17680.1	CDX87569	AT1G76760.1	21798944
AT4G17680.1	CDX88314	AT1G76760.1	21798944
AT4G17680.1	CDY12159	AT2G32840.1	21798944
AT4G17680.1	CDY52552	AT2G32840.1	21798944
AT4G17680.1	CDY00981	AT3G10970.1	21798944
AT4G17680.1	CDY08561	AT3G10970.1	21798944
AT4G17680.1	CDY23554	AT3G12930.1	21798944
AT4G17680.1	CDY24236	AT3G12930.1	21798944
AT4G17680.1	CDY43388	AT3G12930.1	21798944
AT4G17680.1	CDY60119	AT3G12930.1	21798944
AT4G17680.1	CDY24170	AT3G47620.1	21798944
AT4G17680.1	CDY36943	AT3G47620.1	21798944
AT4G17680.1	CDX73744	AT3G51180.1	21798944
AT4G17680.1	CDX77980	AT3G51180.1	21798944
AT4G17680.1	CDX67612	AT3G54826.1	21798944
AT4G17680.1	CDX73445	AT3G54826.1	21798944
AT4G17680.1	CDX78266	AT3G54826.1	21798944
AT4G17680.1	CDY07518	AT3G54826.1	21798944
AT4G17680.1	CDX90948	AT4G02150.1	21798944
AT4G17680.1	CDX97257	AT4G02150.1	21798944
AT4G17680.1	CDY01921	AT4G02150.1	21798944
AT4G17680.1	CDY64806	AT4G02150.1	21798944
AT4G17680.1	CDX68810	AT4G32020.1	21798944
AT4G17680.1	CDX72341	AT4G32020.1	21798944
AT4G17680.1	CDX75213	AT4G32020.1	21798944
AT4G17680.1	CDY13469	AT4G32020.1	21798944
AT4G17680.1	CDX68825	AT4G32190.1	21798944
AT4G17680.1	CDX75227	AT4G32190.1	21798944
AT4G17680.1	CDX81487	AT4G32190.1	21798944
AT4G17680.1	CDX81488	AT4G32190.1	21798944
AT4G17680.1	CDX81489	AT4G32190.1	21798944
AT4G17680.1	CDY61790	AT4G32190.1	21798944
AT4G17680.1	CDY61791	AT4G32190.1	21798944
AT4G17680.1	CDX68833	AT4G32295.1	21798944
AT4G17680.1	CDX72353	AT4G32295.1	21798944
AT4G17680.1	CDX75234	AT4G32295.1	21798944
AT4G17680.1	CDY13480	AT4G32295.1	21798944
AT4G17680.1	CDX69609	AT5G14070.1	21798944
AT4G17680.1	CDX70540	AT5G14070.1	21798944
AT4G17680.1	CDX78558	AT5G14070.1	21798944
AT4G17680.1	CDX85614	AT5G14070.1	21798944
AT4G17680.1	CDX91084	AT5G14070.1	21798944
AT4G17680.1	CDY58422	AT5G14070.1	21798944
AT4G17680.1	CDX67402	AT5G38420.1	21798944
AT4G17680.1	CDX74525	AT5G38420.1	21798944
AT4G17680.1	CDX74532	AT5G38420.1	21798944
AT4G17680.1	CDX99682	AT5G38420.1	21798944
AT4G17680.1	CDY01665	AT5G38420.1	21798944
AT4G17680.1	CDY01671	AT5G38420.1	21798944
AT4G17680.1	CDY52468	AT5G38420.1	21798944
AT4G17680.1	CDY67657	AT5G38420.1	21798944
AT4G17680.1	CDY71122	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90458	Canola	cytosol	94.33	76.64
Bra012650.1-P	Field mustard	nucleus	91.09	64.47
AT4G17680.1	Thale cress	nucleus	73.68	57.96
CDY43447	Canola	nucleus	59.51	48.68
CDY33511	Canola	nucleus	59.51	48.51
CDX77733	Canola	nucleus	58.3	48.0
CDY51856	Canola	cytosol	57.09	46.53
CDY37172	Canola	cytosol	56.28	46.03
CDY03162	Canola	cytosol	59.11	45.34
CDY34127	Canola	extracellular	8.91	36.67
KRH28216	Soybean	nucleus	46.96	35.26
GSMUA_Achr2P12040_001	Banana	plastid	38.06	34.94
KRH77271	Soybean	plastid	45.34	34.78
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	46.96	34.42
Solyc06g061020.2.1	Tomato	nucleus	42.11	31.42
Solyc08g077460.2.1	Tomato	nucleus	44.13	31.32
PGSC0003DMT400004642	Potato	nucleus	43.72	31.21
Os02t0687500-01	Rice	cytosol, nucleus, plastid	40.08	31.13
KRH04275	Soybean	nucleus	44.94	31.09
KRH57556	Soybean	nucleus	43.72	30.86
Solyc08g007120.2.1	Tomato	nucleus	40.89	30.51
GSMUA_Achr1P00560_001	Banana	nucleus	35.63	30.45
PGSC0003DMT400068387	Potato	nucleus	41.3	29.82
GSMUA_Achr2P18250_001	Banana	nucleus	39.68	29.7
GSMUA_Achr4P30100_001	Banana	plastid	36.44	29.51
TraesCS1A01G215300.1	Wheat	cytosol	37.25	28.4
TraesCS1B01G228800.1	Wheat	cytosol	36.84	27.91
TraesCS1D01G217800.1	Wheat	cytosol	36.03	27.73
GSMUA_Achr8P14860_001	Banana	nucleus	37.65	27.6
HORVU1Hr1G054930.3	Barley	cytosol	36.44	27.44
Zm00001d017649_P001	Maize	plastid	36.44	27.19
PGSC0003DMT400052841	Potato	nucleus	37.65	26.65
GSMUA_Achr4P21690_001	Banana	nucleus	34.82	26.54
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	36.03	26.49
CDX69109	Canola	nucleus	21.46	25.85
Zm00001d047069_P001	Maize	cytosol	34.41	25.6
TraesCS6D01G243000.1	Wheat	cytosol	34.41	25.45
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	35.63	25.29
TraesCS6B01G289500.1	Wheat	nucleus	34.41	25.15
Os10t0565500-01	Rice	nucleus	35.63	25.07
CDY52651	Canola	cytosol	21.86	24.43
TraesCS6A01G262200.1	Wheat	nucleus	33.6	24.41
HORVU6Hr1G066640.4	Barley	nucleus	33.6	24.2
EES05709	Sorghum	nucleus	34.41	24.08
Zm00001d051484_P001	Maize	nucleus, plastid	33.6	23.51
CDX72513	Canola	cytosol	22.27	23.5
CDY40647	Canola	cytosol	21.86	22.98
CDY17103	Canola	cytosol	27.13	22.64
CDY40841	Canola	cytosol	26.72	22.07
CDY06767	Canola	cytosol	27.13	22.04
CDX73168	Canola	cytosol	22.27	21.91
CDY15019	Canola	cytosol	22.27	21.91
CDX76311	Canola	cytosol	22.27	21.74
CDY37958	Canola	cytosol, plastid	29.55	21.53
CDY17506	Canola	cytosol, nucleus, plastid	21.86	21.34
CDX93396	Canola	cytosol	28.74	21.13
CDX94520	Canola	cytosol	19.84	20.94
CDY21311	Canola	cytosol	19.84	20.94
CDY07541	Canola	cytosol	19.84	20.94
CDY09318	Canola	cytosol	19.84	20.94
CDY17048	Canola	cytosol	25.91	20.58
CDY20611	Canola	nucleus	27.53	19.94
CDY24542	Canola	nucleus	26.32	19.88
CDY20963	Canola	nucleus	26.72	19.53
CDX88507	Canola	nucleus	22.67	18.79
CDX79294	Canola	nucleus	22.27	18.09
CDY51918	Canola	cytosol	20.65	17.77
CDY26402	Canola	cytosol	20.65	17.23
CDY71192	Canola	cytosol	19.43	17.14
CDX87407	Canola	nucleus	21.86	17.09
CDY01615	Canola	cytosol	21.05	17.05
CDY71607	Canola	cytosol	21.05	16.99
CDY13070	Canola	cytosol	19.03	16.85
CDY18062	Canola	cytosol	18.62	16.31
CDY46345	Canola	cytosol	18.22	15.96
CDY24237	Canola	nucleus	20.24	15.43
CDY43390	Canola	cytosol	20.24	15.38
CDX82568	Canola	nucleus	19.43	14.12
CDY64561	Canola	nucleus	19.03	13.82
CDY23552	Canola	cytosol	6.07	6.91

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078F9D3
UniProt:A0A078F9D3	EnsemblPlants:CDY09609	ProteinID:CDY09609	ProteinID:CDY09609.1	ncoils:Coil	InterPro:E3ligase_BOI_like
EnsemblPlantsGene:GSBRNA2T00031246001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089
PANTHER:PTHR42647	PANTHER:PTHR42647:SF13	SMART:SM00184	UniPathway:UPA00144	UniParc:UPI0004EB40F8	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

BnaC07g34520DBnaC07g34520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9D3]

Coordinates

chrLK031998:+:19666..20602

Molecular Weight (calculated)

27460.7 Da

IEP (calculated)

5.264

GRAVY (calculated)

-0.492

Length

247 amino acids

Sequence
(BLAST)

001: MNPPPPKPPQ VIDMRELLQN HNRKTLNVVS TGLRLTHEQS QNQEQLLSPS SMLPGDLAGE SKRQRDELDS FIQTQGEELQ SKLALYGERR YVELLYAAEE
101: LAGRRVREKE AELEKATRRH AELEARAAQL TEEARTWQLR AATREAEVSS LQAHIQKVIA SQATAEKQSA IGGETEEAED AESVFVDPER IELIGPCCSI
201: CRRNSTTVMA LPCRHLVLCK GCDGGGDVRV CPICLAVKNF GVEVLFS

Best Arabidopsis Sequence Match ( AT4G17680.1 )
(BLAST)

001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.