CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER92590
EER95307
EER99115
EES02107
EES03996
EES05136
EES06399
EES06432
EES07255
EES07768
EES09292
EES10652
EES13033
EES18250
KXG21417
KXG23810
KXG32187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17680.1	EES03996	AT1G22840.1	21798944
AT4G17680.1	EES18250	AT1G22840.1	21798944
AT4G17680.1	EER95307	AT1G49850.1	21798944
AT4G17680.1	KXG23810	AT1G49850.1	21798944
AT4G17680.1	EES06432	AT1G67170.1	21798944
AT4G17680.1	EES02107	AT1G76760.1	21798944
AT4G17680.1	EER92590	AT2G32840.1	21798944
AT4G17680.1	KXG21417	AT3G10970.1	21798944
AT4G17680.1	EER99115	AT3G12930.1	21798944
AT4G17680.1	EER88112	AT3G47620.1	21798944
AT4G17680.1	EES07255	AT3G47620.1	21798944
AT4G17680.1	EES13033	AT3G51180.1	21798944
AT4G17680.1	EES07768	AT3G54826.1	21798944
AT4G17680.1	KXG32187	AT4G02150.1	21798944
AT4G17680.1	EES06399	AT4G32190.1	21798944
AT4G17680.1	EES05136	AT5G14070.1	21798944
AT4G17680.1	EES10652	AT5G14070.1	21798944
AT4G17680.1	EES09292	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017649_P001	Maize	plastid	79.89	85.2
Os02t0687500-01	Rice	cytosol, nucleus, plastid	70.54	78.3
Zm00001d051484_P001	Maize	nucleus, plastid	77.34	77.34
TraesCS6D01G243000.1	Wheat	cytosol	69.12	73.05
TraesCS6B01G289500.1	Wheat	nucleus	69.41	72.49
TraesCS6A01G262200.1	Wheat	nucleus	68.56	71.18
HORVU6Hr1G066640.4	Barley	nucleus	68.27	70.26
GSMUA_Achr2P18250_001	Banana	nucleus	43.63	46.67
GSMUA_Achr1P00560_001	Banana	nucleus	37.96	46.37
GSMUA_Achr2P12040_001	Banana	plastid	34.56	45.35
GSMUA_Achr4P21690_001	Banana	nucleus	40.79	44.44
GSMUA_Achr4P30100_001	Banana	plastid	36.54	42.3
GSMUA_Achr8P14860_001	Banana	nucleus	39.09	40.95
KRH77271	Soybean	plastid	37.11	40.68
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	38.81	40.65
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	39.38	39.94
Solyc06g061020.2.1	Tomato	nucleus	36.83	39.27
Solyc08g007120.2.1	Tomato	nucleus	36.54	38.97
KRH28216	Soybean	nucleus	36.26	38.91
Solyc08g077460.2.1	Tomato	nucleus	38.24	38.79
PGSC0003DMT400004642	Potato	nucleus	37.96	38.73
PGSC0003DMT400068387	Potato	nucleus	36.83	38.01
KRH04275	Soybean	nucleus	37.68	37.25
Bra024967.1-P	Field mustard	plastid	26.06	37.25
KRH57556	Soybean	nucleus	36.26	36.57
AT1G32740.1	Thale cress	nucleus	32.01	36.22
CDX77733	Canola	nucleus	30.31	35.67
CDY33511	Canola	nucleus	30.59	35.64
Bra017511.1-P	Field mustard	nucleus	29.75	34.77
CDY43447	Canola	nucleus	29.75	34.77
AT5G47050.1	Thale cress	nucleus	29.46	34.67
CDY09609	Canola	cytosol	24.08	34.41
PGSC0003DMT400052841	Potato	nucleus	33.99	34.38
CDY03162	Canola	cytosol	30.59	33.54
AT4G17680.1	Thale cress	nucleus	29.18	32.8
CDY37172	Canola	cytosol	28.05	32.78
CDY51856	Canola	cytosol	27.76	32.34
CDX90458	Canola	cytosol	27.76	32.24
Bra022093.1-P	Field mustard	nucleus	18.13	29.09
Bra012650.1-P	Field mustard	nucleus	26.63	26.93
OQU83596	Sorghum	cytosol, extracellular	22.1	25.24
EES12084	Sorghum	cytosol, nucleus, plastid	20.68	24.91
EES05161	Sorghum	plastid	23.23	24.19
OQU81469	Sorghum	cytosol	22.66	23.74
OQU83597	Sorghum	cytosol	22.66	23.6
EES10713	Sorghum	cytosol	23.23	23.56
OQU81471	Sorghum	mitochondrion	24.65	23.02
OQU85032	Sorghum	cytosol	23.51	22.25
EER91098	Sorghum	nucleus	22.1	21.97
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	22.66	21.92
EER95135	Sorghum	plastid	20.11	21.07

Protein Annotations

EnsemblPlants:EES05709	EnsemblPlantsGene:SORBI_3004G278000	EntrezGene:8073199	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF5
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	ProteinID:EES05709	ProteinID:EES05709.1	RefSeq:XP_002452733.1
SEG:seg	UniParc:UPI0001A85E72	UniProt:C5Y0V0	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr4:+:62100589..62102607

Molecular Weight (calculated)

37884.6 Da

IEP (calculated)

7.912

GRAVY (calculated)

-0.388

Length

353 amino acids

Sequence
(BLAST)

001: MAVQAQYPSN LLFHDRGEPD RKGMDMPRPP QLAGVSPAAV YFSSAGATGN NRRKRPREAM AMAPPPAAAA AKEEYVNLFT LQPQQSTSSF ANVALFHNQS
101: RVSSPAATTA LVSTGLRLAF DEQQQLQQQE SKQMNALRYS SSSPSLFGSV SDELAAQVKQ HDEEIDRFVR EQGEQLRRAM ADRLRRHNQA ILVKADQSAA
201: RRLREKAAEA EREARRGAEL EERLARLRGE AAAWQAKALS EQAAAVTLHA QLQHAAAAAR ASVEELAAAG DAGPAESSSS AYVDPCRRTT GPGTSSDRAC
301: LGCRLRPASV VLLPCRHLSL CGECFAAGDA DDAAMACPVC LCVRTGSVEA ILC

Best Arabidopsis Sequence Match ( AT1G32740.1 )
(BLAST)

001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.