Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G243000.1 | Wheat | cytosol | 95.59 | 97.31 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 95.88 | 96.45 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 90.59 | 89.8 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 68.82 | 73.58 |
| EES05709 | Sorghum | nucleus | 71.18 | 68.56 |
| Zm00001d017649_P001 | Maize | plastid | 66.18 | 67.98 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 64.41 | 62.04 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 38.24 | 44.98 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 34.41 | 43.49 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 39.71 | 41.67 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 40.59 | 40.95 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 39.71 | 40.91 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 38.82 | 40.74 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 36.18 | 40.33 |
| KRH77271 | Soybean | plastid | 36.76 | 38.82 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 37.94 | 38.28 |
| Bra024967.1-P | Field mustard | plastid | 27.35 | 37.65 |
| Solyc06g061020.2.1 | Tomato | nucleus | 36.47 | 37.46 |
| KRH28216 | Soybean | nucleus | 36.18 | 37.39 |
| CDY33511 | Canola | nucleus | 32.65 | 36.63 |
| PGSC0003DMT400068387 | Potato | nucleus | 36.76 | 36.55 |
| PGSC0003DMT400004642 | Potato | nucleus | 37.06 | 36.42 |
| CDX77733 | Canola | nucleus | 32.06 | 36.33 |
| Solyc08g007120.2.1 | Tomato | nucleus | 35.29 | 36.25 |
| Solyc08g077460.2.1 | Tomato | nucleus | 37.06 | 36.21 |
| Bra017511.1-P | Field mustard | nucleus | 31.18 | 35.1 |
| CDY43447 | Canola | nucleus | 31.18 | 35.1 |
| KRH57556 | Soybean | nucleus | 35.88 | 34.86 |
| AT5G47050.1 | Thale cress | nucleus | 30.59 | 34.67 |
| AT1G32740.1 | Thale cress | nucleus | 31.76 | 34.62 |
| KRH04275 | Soybean | nucleus | 36.18 | 34.45 |
| CDY09609 | Canola | cytosol | 24.41 | 33.6 |
| CDY03162 | Canola | cytosol | 31.76 | 33.54 |
| CDY37172 | Canola | cytosol | 29.41 | 33.11 |
| CDX90458 | Canola | cytosol | 29.41 | 32.89 |
| AT4G17680.1 | Thale cress | nucleus | 30.29 | 32.8 |
| PGSC0003DMT400052841 | Potato | nucleus | 33.53 | 32.66 |
| CDY51856 | Canola | cytosol | 28.53 | 32.01 |
| Bra022093.1-P | Field mustard | nucleus | 20.0 | 30.91 |
| Bra012650.1-P | Field mustard | nucleus | 28.24 | 27.51 |
| TraesCS2A01G290100.1 | Wheat | cytosol | 25.0 | 26.32 |
| TraesCS3A01G448500.1 | Wheat | mitochondrion | 22.35 | 25.94 |
| TraesCS2A01G290000.1 | Wheat | cytosol | 24.41 | 25.62 |
| TraesCS4A01G293700.1 | Wheat | mitochondrion | 22.06 | 24.35 |
| TraesCS6A01G120700.1 | Wheat | nucleus | 18.82 | 24.33 |
| TraesCS6A01G079900.1 | Wheat | cytosol, mitochondrion, plastid | 16.76 | 23.85 |
| TraesCS7A01G442300.1 | Wheat | mitochondrion | 21.18 | 22.71 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 22.35 | 21.65 |
| TraesCS7A01G441900.1 | Wheat | mitochondrion | 20.0 | 21.52 |
| TraesCS7A01G442100.1 | Wheat | mitochondrion | 19.71 | 21.34 |
| TraesCS4A01G089200.1 | Wheat | plastid | 18.82 | 18.88 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G262200.1 | EnsemblPlantsGene:TraesCS6A01G262200 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD |
| ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF13 | PIRSF:PIRSF036836 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6A:-:485377153..485378761
Molecular Weight (calculated)
36866.5 Da
IEP (calculated)
7.922
GRAVY (calculated)
-0.496
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAQYPSN LLFHDRGDPE RADMDLPKQQ HQQQHQQHPQ QLAGLSPAVY FASGGASGNR RKRAREAMAP PPPAKEEYIG LFAQHSAPFF NMAQLHSSRV
101: AASPSPAPAS VTRVSTGLRL ALDEQQQRQI NSLCYPSSSS PLVPFSDEFA GQMKQHGDEL DKFVRDQGEQ LRRAIADRMR HHNRALLVAA DKSASRRLRE
201: KALEAEREAR RGAELEERLA RLRNEAAAWQ AKALSEQATA VGLHAQLQQA ASAARASCEE LGGGDAGPAE SCSSAYVDPR RAGPDRACHG CHLGAATVVL
301: LPSRHLSLCR DCFAAGDMDV AMACPVCHCV RTGSVEAILC
101: AASPSPAPAS VTRVSTGLRL ALDEQQQRQI NSLCYPSSSS PLVPFSDEFA GQMKQHGDEL DKFVRDQGEQ LRRAIADRMR HHNRALLVAA DKSASRRLRE
201: KALEAEREAR RGAELEERLA RLRNEAAAWQ AKALSEQATA VGLHAQLQQA ASAARASCEE LGGGDAGPAE SCSSAYVDPR RAGPDRACHG CHLGAATVVL
301: LPSRHLSLCR DCFAAGDMDV AMACPVCHCV RTGSVEAILC
001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.