Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
17710559
|
plastid:
18071923
plastid: 19643044 plastid: 22160430 plastid: 22736107 golgi: 25769308 unclear: 25769308 plastid: 27562633 plastid: 28542341 |
msms PMID:
22736107
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
19643044
doi
College of Life Science, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China.
msms PMID:
28542341
doi
National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.
msms PMID:
18071923
doi
Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.
msms PMID:
27562633
doi
Bio-Tech Research Center, Shandong Academy of Agricultural Science, Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crop, Jinan, 250100, China., The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, 27 Shandanan Road, Jinan, Shandong 250100, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G169900.2 | Wheat | plastid | 100.0 | 100.0 |
| TraesCS5B01G162600.1 | Wheat | plastid | 100.0 | 100.0 |
| TraesCS5A01G165700.1 | Wheat | plastid | 100.0 | 100.0 |
| HORVU5Hr1G051010.2 | Barley | plastid | 99.43 | 99.43 |
| HORVU5Hr1G038630.1 | Barley | plastid | 99.43 | 99.43 |
| HORVU5Hr1G033540.2 | Barley | plastid | 98.86 | 98.86 |
| TraesCS2B01G079200.1 | Wheat | plastid | 94.29 | 94.29 |
| TraesCS2B01G079400.1 | Wheat | plastid | 93.71 | 93.71 |
| TraesCS2B01G079100.1 | Wheat | plastid | 93.14 | 93.68 |
| TraesCS2B01G079300.1 | Wheat | plastid | 92.57 | 93.1 |
| Os12t0291400-01 | Rice | plastid | 85.14 | 85.14 |
| TraesCS2B01G079500.1 | Wheat | plastid | 93.14 | 84.46 |
| TraesCS2B01G078900.2 | Wheat | plastid | 89.14 | 84.32 |
| Os12t0291100-01 | Rice | plastid | 82.86 | 82.86 |
| Os12t0292400-01 | Rice | extracellular | 82.86 | 82.86 |
| Os12t0274700-01 | Rice | plastid | 81.71 | 81.71 |
| Zm00001d004894_P001 | Maize | plastid | 74.86 | 77.06 |
| Zm00001d052595_P001 | Maize | plastid | 74.86 | 77.06 |
| GSMUA_Achr8P18400_001 | Banana | cytosol | 11.43 | 76.92 |
| EES09292 | Sorghum | plastid | 74.29 | 76.92 |
| GSMUA_Achr10P... | Banana | plasma membrane | 65.71 | 72.78 |
| GSMUA_Achr6P09710_001 | Banana | plastid | 65.14 | 72.15 |
| GSMUA_Achr2P22730_001 | Banana | unclear | 63.43 | 70.25 |
| PGSC0003DMT400067905 | Potato | plastid | 62.86 | 69.18 |
| PGSC0003DMT400032975 | Potato | mitochondrion, plastid | 66.86 | 65.0 |
| Bra028181.1-P | Field mustard | plastid | 57.71 | 62.35 |
| PGSC0003DMT400050381 | Potato | cytosol, extracellular, plastid | 64.0 | 61.88 |
| PGSC0003DMT400062138 | Potato | cytosol, plastid | 64.0 | 61.88 |
| Solyc02g085950.2.1 | Tomato | extracellular | 63.43 | 61.67 |
| AT1G67090.1 | Thale cress | plastid | 63.43 | 61.67 |
| Solyc02g063150.2.1 | Tomato | nucleus, plastid | 63.43 | 61.33 |
| AT5G38420.1 | Thale cress | plastid | 63.43 | 61.33 |
| Solyc03g034220.2.1 | Tomato | plastid | 62.86 | 61.11 |
| KRH18247 | Soybean | nucleus, plastid | 61.71 | 60.67 |
| KRG93867 | Soybean | plastid | 61.71 | 60.67 |
| KRG93871 | Soybean | plastid | 61.71 | 60.67 |
| Os12t0291200-00 | Rice | plastid | 33.14 | 60.42 |
| AT5G38430.1 | Thale cress | plastid | 62.29 | 60.22 |
| AT5G38410.3 | Thale cress | plastid | 64.0 | 60.22 |
| VIT_17s0000g03690.t01 | Wine grape | plastid | 61.71 | 60.0 |
| CDY67657 | Canola | plastid | 61.14 | 59.12 |
| CDY01665 | Canola | plastid | 61.14 | 59.12 |
| CDY52468 | Canola | plastid | 61.14 | 59.12 |
| CDY71122 | Canola | plastid | 61.14 | 59.12 |
| Bra028174.1-P | Field mustard | plastid | 61.14 | 59.12 |
| Bra034029.1-P | Field mustard | plastid | 60.57 | 58.56 |
| CDY12613 | Canola | plastid | 60.57 | 58.56 |
| Bra034027.1-P | Field mustard | plastid | 60.57 | 58.56 |
| CDX67402 | Canola | plastid | 60.57 | 58.56 |
| CDX74525 | Canola | plastid | 60.57 | 58.56 |
| CDX74532 | Canola | plastid | 60.57 | 58.56 |
| Bra025431.1-P | Field mustard | plastid | 60.57 | 58.56 |
| CDY01671 | Canola | plastid | 60.57 | 58.56 |
| CDY42338 | Canola | plastid | 60.57 | 58.56 |
| Bra028406.1-P | Field mustard | plastid | 60.0 | 58.01 |
| CDY12616 | Canola | plastid | 58.86 | 56.91 |
| Bra034024.1-P | Field mustard | plastid | 58.86 | 56.91 |
| CDY42337 | Canola | plastid | 58.29 | 56.35 |
| CDX99682 | Canola | plastid | 60.57 | 56.08 |
| CDY12612 | Canola | cytosol | 38.29 | 55.37 |
| CDY42341 | Canola | plastid | 57.14 | 53.76 |
| KRG93872 | Soybean | plastid | 40.57 | 52.59 |
| KRH46925 | Soybean | plastid | 26.29 | 51.11 |
| KRG93873 | Soybean | plastid | 29.14 | 48.57 |
| KRH01757 | Soybean | plastid | 40.57 | 47.33 |
| KRG99965 | Soybean | plastid | 32.57 | 43.51 |
| KRG99964 | Soybean | plastid | 24.57 | 43.0 |
| KRH15458 | Soybean | plastid | 32.0 | 35.22 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G162800.1 | EnsemblPlantsGene:TraesCS5B01G162800 | Gene3D:3.30.190.10 | InterPro:IPR036385 | InterPro:RuBisCO_sc | InterPro:RuBisCO_sc_dom |
| InterPro:RuBisCO_ssu_N | InterPro:RuBisCO_ssu_sf | KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | PANTHER:PTHR31262 | PFAM:PF00101 |
| PFAM:PF12338 | PRINTS:PR00152 | SMART:SM00961 | SUPFAM:SSF55239 | TIGR:cd03527 | MapMan:1.2.1.1.2 |
Description
No Description!
Coordinates
chr5B:-:300097524..300098176
Molecular Weight (calculated)
19491.5 Da
IEP (calculated)
8.707
GRAVY (calculated)
-0.144
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTVMASSA TSVAPFQGLK STAGLPVSRR SNGASLGSVS NGGRIRCMQV WPIEGIKKFE TLSYLPPLST EALLKQVDYL IRSKWVPCLE FSKVGFIFRE
101: HNASPGYYDG RYWTMWKLPM FGCTDATQVI NEVEEVKKEY PDAYVRIIGF DNMRQVQCVS FIAFKPPGCE ESGKA
101: HNASPGYYDG RYWTMWKLPM FGCTDATQVI NEVEEVKKEY PDAYVRIIGF DNMRQVQCVS FIAFKPPGCE ESGKA
001: MASSMFSSTA VVTSPAQATM VAPFTGLKSS ASFPVTRKAN NDITSITSNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A
Arabidopsis Description
RBCS-2BRibulose bisphosphate carboxylase small chain 2B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10797]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.