Factsheet for VIT_17s0000g03690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g01350.t01
VIT_04s0043g00760.t01
VIT_08s0007g05740.t01
VIT_11s0078g00310.t01
VIT_11s0078g00380.t01
VIT_12s0057g00690.t01
VIT_14s0036g00890.t01
VIT_14s0066g01280.t01
VIT_16s0098g00600.t01
VIT_17s0000g02230.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946
AT5G38420.1	VIT_08s0007g05740.t01	AT2G41370.1	21798944
AT5G38420.1	VIT_04s0043g00760.t01	AT3G04240.1	21798944
AT5G38420.1	VIT_14s0036g00890.t01	AT3G04240.1	21798944
AT5G38420.1	VIT_17s0000g02230.t01	AT3G17860.1	21798944
AT5G38420.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT5G38420.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT5G38420.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944
AT5G38420.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944
AT5G38430.1	VIT_11s0078g00310.t01	AT2G39930.1	21798944
AT5G38430.1	VIT_11s0078g00380.t01	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52468	Canola	plastid	74.44	74.03
Bra025431.1-P	Field mustard	plastid	73.89	73.48
CDX67402	Canola	plastid	73.89	73.48
GSMUA_Achr8P18400_001	Banana	cytosol	10.56	73.08
CDY71122	Canola	plastid	73.33	72.93
Bra028174.1-P	Field mustard	plastid	73.33	72.93
Bra028406.1-P	Field mustard	plastid	73.33	72.93
CDY01671	Canola	plastid	73.33	72.93
CDX74532	Canola	plastid	73.33	72.93
Bra028181.1-P	Field mustard	plastid	65.56	72.84
CDX74525	Canola	plastid	72.78	72.38
CDY67657	Canola	plastid	72.78	72.38
CDY01665	Canola	plastid	72.22	71.82
GSMUA_Achr2P22730_001	Banana	unclear	62.78	71.52
GSMUA_Achr10P...	Banana	plasma membrane	62.78	71.52
PGSC0003DMT400062138	Potato	cytosol, plastid	71.67	71.27
AT5G38430.1	Thale cress	plastid	71.67	71.27
AT5G38420.1	Thale cress	plastid	71.11	70.72
CDX99682	Canola	plastid	73.89	70.37
GSMUA_Achr6P09710_001	Banana	plastid	61.67	70.25
AT1G67090.1	Thale cress	plastid	70.0	70.0
PGSC0003DMT400032975	Potato	mitochondrion, plastid	70.0	70.0
PGSC0003DMT400067905	Potato	plastid	61.67	69.81
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	70.0	69.61
AT5G38410.3	Thale cress	plastid	71.67	69.35
Solyc02g063150.2.1	Tomato	nucleus, plastid	68.89	68.51
Solyc03g034220.2.1	Tomato	plastid	68.33	68.33
Solyc02g085950.2.1	Tomato	extracellular	68.33	68.33
KRH46925	Soybean	plastid	33.89	67.78
CDY12613	Canola	plastid	67.78	67.4
Bra034029.1-P	Field mustard	plastid	67.78	67.4
Bra034027.1-P	Field mustard	plastid	67.78	67.4
CDY12616	Canola	plastid	66.11	65.75
Bra034024.1-P	Field mustard	plastid	66.11	65.75
CDY42338	Canola	plastid	64.44	64.09
CDY42337	Canola	plastid	64.44	64.09
Os12t0274700-01	Rice	plastid	60.56	62.29
EES09292	Sorghum	plastid	58.33	62.13
TraesCS2D01G065500.1	Wheat	plastid	56.67	61.82
Os12t0292400-01	Rice	extracellular	60.0	61.71
TraesCS5A01G165400.2	Wheat	plastid	60.0	61.71
TraesCS5A01G165700.1	Wheat	plastid	60.0	61.71
TraesCS5B01G162600.1	Wheat	plastid	60.0	61.71
TraesCS5B01G162800.1	Wheat	plastid	60.0	61.71
TraesCS5D01G169600.2	Wheat	plastid	60.0	61.71
TraesCS5D01G169900.2	Wheat	plastid	60.0	61.71
HORVU1Hr1G035720.2	Barley	plastid	60.0	61.36
CDY42341	Canola	plastid	63.33	61.29
Zm00001d004894_P001	Maize	plastid	57.78	61.18
HORVU5Hr1G033540.2	Barley	plastid	59.44	61.14
Os12t0291400-01	Rice	plastid	59.44	61.14
Os12t0291100-01	Rice	plastid	59.44	61.14
HORVU5Hr1G051010.2	Barley	plastid	59.44	61.14
HORVU5Hr1G038630.1	Barley	plastid	59.44	61.14
HORVU2Hr1G010690.1	Barley	plastid	58.89	60.57
HORVU2Hr1G010630.1	Barley	plastid	58.89	60.57
TraesCS2A01G066700.1	Wheat	plastid	58.33	60.34
TraesCS2D01G065300.1	Wheat	plastid	58.33	60.34
TraesCS2B01G079300.1	Wheat	plastid	58.33	60.34
TraesCS2D01G065600.1	Wheat	plastid	58.33	60.0
TraesCS2D01G065200.1	Wheat	plastid	58.33	60.0
TraesCS2B01G079400.1	Wheat	plastid	58.33	60.0
TraesCS2B01G079200.1	Wheat	plastid	58.33	60.0
TraesCS2D01G065400.1	Wheat	plastid	58.33	60.0
TraesCS2A01G067300.1	Wheat	plastid	58.33	60.0
TraesCS2A01G067200.1	Wheat	plastid	58.33	60.0
TraesCS2A01G066800.1	Wheat	plastid	58.33	60.0
TraesCS2B01G079100.1	Wheat	plastid	57.78	59.77
TraesCS2A01G067100.1	Wheat	plastid	57.78	59.43
TraesCS2A01G067000.1	Wheat	plastid	57.78	59.43
Zm00001d052595_P001	Maize	plastid	56.11	59.41
TraesCS2D01G065100.2	Wheat	plastid	57.22	59.2
KRH01757	Soybean	plastid	47.78	57.33
KRG99964	Soybean	plastid	31.67	57.0
TraesCS2B01G078900.2	Wheat	plastid	57.78	56.22
CDY12612	Canola	cytosol	37.78	56.2
HORVU2Hr1G010670.1	Barley	plastid	58.89	55.79
TraesCS2A01G066900.1	Wheat	plastid	58.33	54.69
TraesCS2B01G079500.1	Wheat	plastid	58.33	54.4
KRG99965	Soybean	plastid	38.89	53.44
HORVU5Hr1G050990.4	Barley	plastid	52.22	48.96
VIT_11s0052g00820.t01	Wine grape	plastid	42.78	45.56
KRH15458	Soybean	plastid	37.78	42.77
Os12t0291200-00	Rice	plastid	22.22	41.67
HORVU7Hr1G048050.2	Barley	plastid	16.67	34.09

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	EntrezGene:100267942	wikigene:100267942	Gene3D:3.30.190.10
UniProt:A5C718	EMBL:AM484546	ProteinID:CAN64291	ProteinID:CAN64291.1	ProteinID:CCB43221	ProteinID:CCB43221.1
EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829
GO:GO:0016984	GO:GO:0055114	InterPro:IPR036385	EntrezGene:LOC100267942	wikigene:LOC100267942	PFAM:PF00101
PFAM:PF12338	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom
InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	TIGR:TC68454	TIGR:TC71209
UniParc:UPI0001522749	ArrayExpress:VIT_17s0000g03690	EnsemblPlantsGene:VIT_17s0000g03690	EnsemblPlants:VIT_17s0000g03690.t01	unigene:Vvi.8122	RefSeq:XP_002276967
RefSeq:XP_002276967.1	RefSeq:XP_002276991	RefSeq:XP_002276991.2	RefSeq:XP_003634190	RefSeq:XP_003634190.1	SEG:seg

Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A5C718]

Coordinates

chr17:-:3623303..3624351

Molecular Weight (calculated)

20429.6 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.313

Length

180 amino acids

Sequence
(BLAST)

001: MASSMVSSAT VATINRATPA QANMVAPFTG LKSLSTFPGT RKANTDITSV ASNGGRVRCM KVWPTEGLMK FETLSYLPPL NDEQLCKEVD YLLRMKWIPC
101: LEFTKLYPYP HREHNRSPGY YDGRYWTMWK LPMFGCTDSA QVIKEVQEAR TAYPDAHIRI IGFDNNRQVQ CIAFIAYKPS

Best Arabidopsis Sequence Match ( AT5G38430.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS ASFPVTRKAN NDITSITSNG GRVSCMKVWP PIGKKKFETL SYLPDLTDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTD A

Arabidopsis Description

RBCS-1BRibulose bisphosphate carboxylase small chain 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10796]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.