Factsheet for HORVU2Hr1G010630.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G021800.1
HORVU1Hr1G092980.14
HORVU2Hr1G061320.3
HORVU2Hr1G067320.4
HORVU3Hr1G055550.3
HORVU3Hr1G106880.5
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU4Hr1G087520.3
HORVU5Hr1G025740.13
HORVU5Hr1G060730.3
HORVU5Hr1G098570.6
HORVU6Hr1G069310.1
HORVU7Hr1G051710.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38420.1	HORVU0Hr1G021800.1	AT1G01440.1	21798944
AT5G38420.1	HORVU1Hr1G092980.14	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G055550.3	AT1G01440.1	21798944
AT5G38420.1	HORVU7Hr1G082720.10	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G38420.1	HORVU2Hr1G067320.4	AT3G04240.1	21798944
AT5G38420.1	HORVU4Hr1G087520.3	AT3G17860.1	21798944
AT5G38420.1	HORVU5Hr1G060730.3	AT3G17860.1	21798944
AT5G38420.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT5G38420.1	HORVU2Hr1G061320.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003360.1	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003410.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G009730.1	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G098570.6	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G025740.13	AT5G11980.1	21798944
AT5G38430.1	HORVU7Hr1G051710.1	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G010690.1	Barley	plastid	100.0	100.0
TraesCS2D01G065300.1	Wheat	plastid	97.71	98.28
TraesCS2B01G079200.1	Wheat	plastid	97.71	97.71
TraesCS2A01G066700.1	Wheat	plastid	97.14	97.7
TraesCS2B01G079300.1	Wheat	plastid	97.14	97.7
TraesCS2A01G066800.1	Wheat	plastid	97.14	97.14
TraesCS2D01G065200.1	Wheat	plastid	97.14	97.14
TraesCS2B01G079100.1	Wheat	plastid	96.57	97.13
TraesCS2D01G065100.2	Wheat	plastid	96.0	96.55
HORVU5Hr1G051010.2	Barley	plastid	94.29	94.29
HORVU5Hr1G038630.1	Barley	plastid	94.29	94.29
HORVU5Hr1G033540.2	Barley	plastid	93.71	93.71
HORVU1Hr1G035720.2	Barley	plastid	93.14	92.61
HORVU2Hr1G010670.1	Barley	plastid	100.0	92.11
TraesCS2A01G066900.1	Wheat	plastid	97.14	88.54
TraesCS2B01G078900.2	Wheat	plastid	92.57	87.57
Os12t0291400-01	Rice	plastid	84.57	84.57
Os12t0292400-01	Rice	extracellular	82.29	82.29
Os12t0274700-01	Rice	plastid	82.29	82.29
Os12t0291100-01	Rice	plastid	82.29	82.29
GSMUA_Achr8P18400_001	Banana	cytosol	11.43	76.92
Zm00001d052595_P001	Maize	plastid	73.71	75.88
EES09292	Sorghum	plastid	73.14	75.74
Zm00001d004894_P001	Maize	plastid	73.14	75.29
GSMUA_Achr10P...	Banana	plasma membrane	66.29	73.42
GSMUA_Achr6P09710_001	Banana	plastid	65.71	72.78
GSMUA_Achr2P22730_001	Banana	unclear	64.0	70.89
PGSC0003DMT400067905	Potato	plastid	63.43	69.81
HORVU5Hr1G050990.4	Barley	plastid	76.57	69.79
PGSC0003DMT400032975	Potato	mitochondrion, plastid	67.43	65.56
Bra028181.1-P	Field mustard	plastid	58.86	63.58
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	64.57	62.43
PGSC0003DMT400062138	Potato	cytosol, plastid	64.57	62.43
AT1G67090.1	Thale cress	plastid	64.0	62.22
Solyc02g085950.2.1	Tomato	extracellular	64.0	62.22
Solyc02g063150.2.1	Tomato	nucleus, plastid	64.0	61.88
AT5G38420.1	Thale cress	plastid	64.0	61.88
Solyc03g034220.2.1	Tomato	plastid	63.43	61.67
KRG93867	Soybean	plastid	62.29	61.24
KRG93871	Soybean	plastid	62.29	61.24
KRH18247	Soybean	nucleus, plastid	62.29	61.24
AT5G38430.1	Thale cress	plastid	62.86	60.77
AT5G38410.3	Thale cress	plastid	64.57	60.75
Bra028174.1-P	Field mustard	plastid	62.29	60.22
CDY52468	Canola	plastid	62.29	60.22
CDY71122	Canola	plastid	62.29	60.22
CDY01665	Canola	plastid	62.29	60.22
CDY67657	Canola	plastid	61.71	59.67
CDX74532	Canola	plastid	61.71	59.67
CDX74525	Canola	plastid	61.71	59.67
CDY01671	Canola	plastid	61.71	59.67
Bra025431.1-P	Field mustard	plastid	61.71	59.67
Os12t0291200-00	Rice	plastid	32.57	59.38
CDY12613	Canola	plastid	61.14	59.12
Bra034027.1-P	Field mustard	plastid	61.14	59.12
Bra034029.1-P	Field mustard	plastid	61.14	59.12
CDY42338	Canola	plastid	61.14	59.12
CDX67402	Canola	plastid	61.14	59.12
VIT_17s0000g03690.t01	Wine grape	plastid	60.57	58.89
Bra028406.1-P	Field mustard	plastid	60.57	58.56
CDY12616	Canola	plastid	59.43	57.46
Bra034024.1-P	Field mustard	plastid	59.43	57.46
CDX99682	Canola	plastid	61.71	57.14
CDY42337	Canola	plastid	58.86	56.91
CDY12612	Canola	cytosol	38.86	56.2
CDY42341	Canola	plastid	57.71	54.3
HORVU7Hr1G048050.2	Barley	plastid	26.86	53.41
KRG93872	Soybean	plastid	40.57	52.59
KRH46925	Soybean	plastid	26.29	51.11
KRG93873	Soybean	plastid	29.71	49.52
KRH01757	Soybean	plastid	41.14	48.0
KRG99965	Soybean	plastid	33.14	44.27
KRG99964	Soybean	plastid	24.57	43.0
KRH15458	Soybean	plastid	32.57	35.85

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EMBL:AK354803	EMBL:AK355912
UniProt:F2CT51	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829
GO:GO:0016984	GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G010630	EnsemblPlants:HORVU2Hr1G010630.1	InterPro:IPR036385	PFAM:PF00101
PFAM:PF12338	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom
InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI0002004835	:

Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:F2CT51]

Coordinates

chrchr2H:+:20252719..20254301

Molecular Weight (calculated)

19460.5 Da

IEP (calculated)

8.709

GRAVY (calculated)

-0.127

Length

175 amino acids

Sequence
(BLAST)

001: MAPAVMASSA TTVAPFQGLK STAGLPVSRR SGSAGLSSVS NGGRIRCMQV WPIEGIKKFE TLSYLPPLST EALLKQVDYL IRSKWVPCLE FSKVGFVFRE
101: HNSSPGYYDG RYWTMWKLPM FGCTDATQVL NEVEEVKKEY PDAYVRIIGF DNLRQVQCVS FIAFRPPGCE ESGKA

Best Arabidopsis Sequence Match ( AT5G38410.3 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEVINTKHGF VYREHGNTPG YYDGRYWTMW KLPLFGCTDS AQVLKEVEEC KKEYPGAFIR IIGFDNTRQV QCISFIAYKP PSFTEA

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.