Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G268200.1 | Wheat | nucleus | 91.9 | 94.81 |
| TraesCS2A01G267400.1 | Wheat | nucleus | 91.9 | 94.81 |
| TraesCS2D01G256400.1 | Wheat | nucleus | 91.62 | 94.52 |
| Zm00001d018742_P001 | Maize | nucleus | 79.89 | 81.48 |
| Os07t0129700-01 | Rice | nucleus | 80.45 | 81.13 |
| EER95833 | Sorghum | nucleus | 80.17 | 80.62 |
| Zm00001d007842_P002 | Maize | nucleus | 78.21 | 77.78 |
| CDY34012 | Canola | nucleus | 38.27 | 70.98 |
| GSMUA_Achr10P... | Banana | nucleus | 42.18 | 58.08 |
| Solyc04g077210.2.1 | Tomato | nucleus | 52.51 | 52.96 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 54.47 | 52.7 |
| HORVU5Hr1G098570.6 | Barley | plastid | 59.22 | 52.22 |
| PGSC0003DMT400012712 | Potato | nucleus | 52.23 | 51.94 |
| KRH61471 | Soybean | nucleus | 50.84 | 50.42 |
| Bra000638.1-P | Field mustard | nucleus | 53.91 | 49.87 |
| KRH15482 | Soybean | nucleus | 53.63 | 49.87 |
| KRG88661 | Soybean | nucleus | 53.35 | 49.35 |
| HORVU4Hr1G009730.1 | Barley | nucleus | 50.0 | 49.18 |
| AT4G08150.1 | Thale cress | nucleus | 53.91 | 48.49 |
| CDX83145 | Canola | nucleus | 53.91 | 48.01 |
| HORVU4Hr1G003360.1 | Barley | nucleus | 41.06 | 45.79 |
| HORVU1Hr1G015720.1 | Barley | nucleus | 36.59 | 42.81 |
| CDY68624 | Canola | nucleus | 39.94 | 40.97 |
| HORVU4Hr1G003410.3 | Barley | nucleus | 37.99 | 38.53 |
| HORVU6Hr1G028610.2 | Barley | nucleus | 24.58 | 28.48 |
| HORVU4Hr1G084680.1 | Barley | nucleus | 21.51 | 24.44 |
| HORVU7Hr1G114650.2 | Barley | nucleus | 21.79 | 24.15 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | UniProt:A0A287I5T4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:HORVU2Hr1G061320 | EnsemblPlants:HORVU2Hr1G061320.3 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03789 |
| PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 |
| PANTHER:PTHR11850 | PANTHER:PTHR11850:SF203 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 |
| SUPFAM:SSF46689 | UniParc:UPI000B47B238 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:411902362..411906256
Molecular Weight (calculated)
39601.9 Da
IEP (calculated)
6.851
GRAVY (calculated)
-0.616
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: LGFVDLRMDR SSFGNLAAGG GGSSSSKSSP SFLQLQPLST TTVAAGPGPM GGTYYGTPLA LHQGAAAAGS SQSPYQFHHH KSSVGEISQA EAEAIKTKIM
101: AHPQYTALLV AYLDCQKVGA PPDVLERLTA MAAKLDAHTP GRLHEARDPE LDQFMEAYCN MLAKYREELT RPIEEAMEFL KRVEAQLDSI TGGGHGSAPL
201: SLAAHSGKYE GVGSSEDDMD ASGRENEPPE IDPRAEDKDL KYQLLKKYSG YLSSLRQEFS KKKKKGKLPK EARQKLLHWW ELHYKWPYPS ETEKIALAES
301: TGLDQKQINN WFINQRKRHW KPSEDMPFVM MEGFHPQNAA ALYMDGQFMA DGMYRLGS
101: AHPQYTALLV AYLDCQKVGA PPDVLERLTA MAAKLDAHTP GRLHEARDPE LDQFMEAYCN MLAKYREELT RPIEEAMEFL KRVEAQLDSI TGGGHGSAPL
201: SLAAHSGKYE GVGSSEDDMD ASGRENEPPE IDPRAEDKDL KYQLLKKYSG YLSSLRQEFS KKKKKGKLPK EARQKLLHWW ELHYKWPYPS ETEKIALAES
301: TGLDQKQINN WFINQRKRHW KPSEDMPFVM MEGFHPQNAA ALYMDGQFMA DGMYRLGS
001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
Arabidopsis Description
KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.