Factsheet for Solyc04g077210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007800.2.1
Solyc02g091710.2.1
Solyc03g019730.2.1
Solyc03g113990.2.1
Solyc03g121800.2.1
Solyc06g072080.2.1
Solyc08g041820.2.1
Solyc08g079010.1.1
Solyc08g080120.2.1
Solyc08g081400.2.1
Solyc09g011380.2.1
Solyc10g082050.1.1
Solyc10g086640.1.1
Solyc11g069890.1.1
Solyc12g044910.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08150.1	Solyc08g080120.2.1	AT1G62990.1	15781858
AT4G08150.1	Solyc02g091710.2.1	AT2G22680.1	21798944
AT4G08150.1	Solyc11g069890.1.1	AT2G27990.1	15781858
AT4G08150.1	Solyc01g007800.2.1	AT3G52525.1	15781858
AT4G08150.1	Solyc10g082050.1.1	AT3G52525.1	15781858
AT4G08150.1	Solyc03g121800.2.1	AT4G08520.1	21798944
AT4G08150.1	Solyc12g044910.1.1	AT4G08520.1	21798944
AT4G08150.1	Solyc08g079010.1.1	AT4G12450.1	21798944
AT4G08150.1	Solyc09g011380.2.1	AT5G02030.1	12897247
AT4G08150.1	Solyc10g086640.1.1	AT5G02030.1	12897247
AT4G08150.1	Solyc09g011380.2.1	AT5G02030.1	15019989
AT4G08150.1	Solyc10g086640.1.1	AT5G02030.1	15019989
AT4G08150.1	Solyc09g011380.2.1	AT5G02030.1	15781858
AT4G08150.1	Solyc10g086640.1.1	AT5G02030.1	15781858
AT4G08150.1	Solyc08g041820.2.1	AT5G11060.1	15781858
AT4G08150.1	Solyc08g081400.2.1	AT5G41410.1	11701881
AT4G08150.1	Solyc08g081400.2.1	AT5G41410.1	15781858
AT4G08150.1	Solyc08g081400.2.1	AT5G41410.1	17873098
AT4G08150.1	Solyc03g113990.2.1	AT5G50100.1	21798944
AT4G08150.1	Solyc03g019730.2.1	AT5G50680.1	21798944
AT4G08150.1	Solyc06g072080.2.1	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012712	Potato	nucleus	95.49	94.17
Os03t0673000-00	Rice	nucleus	18.31	84.42
CDY34012	Canola	nucleus	44.23	81.35
GSMUA_Achr5P01960_001	Banana	nucleus	40.0	73.96
VIT_18s0001g08380.t01	Wine grape	nucleus	73.52	70.54
GSMUA_Achr7P08050_001	Banana	nucleus	50.42	67.29
GSMUA_Achr4P28270_001	Banana	nucleus	50.42	66.05
KRH15482	Soybean	nucleus	69.01	63.64
KRG88661	Soybean	nucleus	69.3	63.57
GSMUA_Achr4P03120_001	Banana	nucleus	49.01	60.0
GSMUA_Achr7P27540_001	Banana	nucleus	58.87	59.71
GSMUA_Achr3P26230_001	Banana	nucleus	53.52	59.01
Bra000638.1-P	Field mustard	nucleus	63.38	58.14
GSMUA_Achr10P...	Banana	nucleus	41.97	57.31
GSMUA_Achr2P13200_001	Banana	nucleus	56.62	57.27
AT4G08150.1	Thale cress	nucleus	63.94	57.04
CDX83145	Canola	nucleus	63.1	55.72
GSMUA_Achr4P32230_001	Banana	nucleus	53.8	55.36
TraesCS2B01G268200.1	Wheat	nucleus	53.8	55.04
Zm00001d018742_P001	Maize	nucleus	54.37	54.99
TraesCS2A01G267400.1	Wheat	nucleus	53.52	54.76
Os03t0727000-02	Rice	nucleus	55.49	54.57
TraesCS2D01G256400.1	Wheat	nucleus	53.24	54.47
GSMUA_Achr6P04640_001	Banana	nucleus	54.37	54.06
EER95833	Sorghum	nucleus	53.8	53.65
Os07t0129700-01	Rice	nucleus	53.52	53.52
TraesCS4D01G058000.1	Wheat	nucleus	54.08	53.04
TraesCS4A01G256700.1	Wheat	nucleus	54.08	53.04
TraesCS4B01G057900.1	Wheat	nucleus	54.08	52.89
HORVU2Hr1G061320.3	Barley	nucleus, plastid	52.96	52.51
Zm00001d007842_P002	Maize	nucleus	52.96	52.22
HORVU4Hr1G009730.1	Barley	nucleus	53.24	51.92
Zm00001d033859_P002	Maize	nucleus	52.39	51.81
TraesCS5B01G410600.1	Wheat	nucleus	45.92	51.58
EER90950	Sorghum	nucleus	51.83	51.11
TraesCS5A01G405900.1	Wheat	nucleus	46.76	49.85
TraesCS5D01G415900.1	Wheat	nucleus	47.04	49.26
TraesCS4A01G292200.1	Wheat	nucleus	42.82	47.65
CDY68624	Canola	nucleus	46.76	47.56
OQU90921	Sorghum	nucleus	46.76	47.56
HORVU4Hr1G003360.1	Barley	nucleus	42.54	47.04
TraesCS4B01G021900.2	Wheat	nucleus	42.54	46.46
EER91090	Sorghum	nucleus	43.38	46.11
Zm00001d033861_P001	Maize	nucleus	45.35	44.72
TraesCS4D01G019600.1	Wheat	nucleus	42.82	44.71
Os03t0771500-01	Rice	nucleus	41.41	43.75
Solyc02g081120.2.1	Tomato	nucleus	43.38	43.5
OQU91064	Sorghum	nucleus	45.35	43.4
HORVU5Hr1G098570.6	Barley	plastid	47.32	41.38
Solyc05g005090.2.1	Tomato	nucleus	36.9	40.94
Zm00001d033404_P002	Maize	nucleus	42.54	40.7
Os03t0727200-00	Rice	nucleus	41.69	40.55
TraesCS4B01G022000.1	Wheat	nucleus	34.08	40.33
TraesCS4D01G019800.1	Wheat	nucleus	36.34	40.06
Solyc01g100510.2.1	Tomato	nucleus	37.46	39.7
TraesCS4D01G019900.1	Wheat	nucleus	36.34	39.57
TraesCS4A01G292100.1	Wheat	nucleus	36.34	39.09
Os03t0673500-00	Rice	nucleus	37.75	38.95
TraesCS4A01G291900.1	Wheat	nucleus	36.06	38.91
HORVU4Hr1G003410.3	Barley	nucleus	37.18	37.39
Zm00001d013559_P001	Maize	cytosol, mitochondrion, nucleus	16.06	34.97
Zm00001d034212_P001	Maize	nucleus	47.61	34.92
TraesCS4A01G292000.1	Wheat	cytosol, nucleus, plastid	14.37	33.55
TraesCS4A01G251800.1	Wheat	nucleus	14.93	31.93
Os03t0772100-00	Rice	vacuole	35.21	30.05
Solyc03g112740.1.1	Tomato	nucleus	15.21	29.35
Solyc08g080120.2.1	Tomato	nucleus	23.1	26.45
Solyc08g041820.2.1	Tomato	nucleus	25.92	26.36
Solyc12g010410.1.1	Tomato	nucleus	23.1	24.92
Solyc07g007120.2.1	Tomato	nucleus	25.63	21.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539
UniProt:K4BUF8	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791
PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF203
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g077210.2
EnsemblPlants:Solyc04g077210.2.1	UniParc:UPI0002766260	SEG:seg	:	:	:

Description

Homeobox protein knotted-1-like 1 [Source:Projected from Arabidopsis thaliana (AT4G08150) UniProtKB/Swiss-Prot;Acc:P46639]

Coordinates

chr4:+:62135407..62142672

Molecular Weight (calculated)

40096.0 Da

IEP (calculated)

6.237

GRAVY (calculated)

-0.849

Length

355 amino acids

Sequence
(BLAST)

001: MENNNYNNHV SGENSGGQRG HFFYGGNQVL GGAAPIYGRG GDCYDPMIVK TEGGGSTSHH NHTFHYPSII RNHHHDSTET SGGGAGAGEV IEALKAKIIA
101: HPQCSNLLDA YMDCQKVGAP PEVAARLSAV RQEFEARQRA SLTDRDVSKD PELDQFMEAY YDMLVKYREE LTRPLQEAME FMQKIEAQLN MLGNAPVRIF
201: NSEDKCEGVG SSEEDQDNSG GETELPEIDP RAEDRELKNH LLRKYSGYLS SLKQELSKKK KKGKLPKDAR QKLITWWELH YKWPYPSESE KVALAESTGL
301: DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQSAAALY MEGHYMGEGP FRLGQ

Best Arabidopsis Sequence Match ( AT4G08150.1 )
(BLAST)

001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP

Arabidopsis Description

KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.