Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P01960_001 | Banana | nucleus | 41.61 | 69.79 |
| CDY34012 | Canola | nucleus | 41.3 | 68.91 |
| GSMUA_Achr7P27540_001 | Banana | nucleus | 71.43 | 65.71 |
| GSMUA_Achr4P03120_001 | Banana | nucleus | 59.01 | 65.52 |
| GSMUA_Achr4P28270_001 | Banana | nucleus | 53.42 | 63.47 |
| GSMUA_Achr7P08050_001 | Banana | nucleus | 51.55 | 62.41 |
| Os03t0727000-02 | Rice | nucleus | 67.08 | 59.83 |
| TraesCS4D01G058000.1 | Wheat | nucleus | 64.91 | 57.73 |
| TraesCS4A01G256700.1 | Wheat | nucleus | 64.91 | 57.73 |
| TraesCS4B01G057900.1 | Wheat | nucleus | 64.91 | 57.58 |
| Zm00001d033859_P002 | Maize | nucleus | 63.66 | 57.1 |
| HORVU4Hr1G009730.1 | Barley | nucleus | 64.29 | 56.87 |
| EER90950 | Sorghum | nucleus | 62.11 | 55.56 |
| Solyc04g077210.2.1 | Tomato | nucleus | 59.01 | 53.52 |
| GSMUA_Achr10P... | Banana | nucleus | 42.86 | 53.08 |
| PGSC0003DMT400012712 | Potato | nucleus | 59.32 | 53.06 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 59.32 | 51.62 |
| GSMUA_Achr4P32230_001 | Banana | nucleus | 54.04 | 50.43 |
| GSMUA_Achr2P13200_001 | Banana | nucleus | 54.04 | 49.57 |
| KRH15482 | Soybean | nucleus | 59.01 | 49.35 |
| KRH61471 | Soybean | nucleus | 55.28 | 49.31 |
| KRG88661 | Soybean | nucleus | 58.39 | 48.58 |
| GSMUA_Achr6P04640_001 | Banana | nucleus | 52.48 | 47.34 |
| Bra000638.1-P | Field mustard | nucleus | 54.35 | 45.22 |
| AT4G08150.1 | Thale cress | nucleus | 55.28 | 44.72 |
| GSMUA_Achr8P05110_001 | Banana | nucleus | 41.93 | 43.69 |
| CDX83145 | Canola | nucleus | 54.35 | 43.53 |
| GSMUA_Achr8P10550_001 | Banana | nucleus | 37.89 | 39.74 |
| GSMUA_Achr11P... | Banana | nucleus | 37.89 | 39.61 |
| GSMUA_Achr2P00410_001 | Banana | nucleus | 36.65 | 38.69 |
| GSMUA_Achr4P14600_001 | Banana | nucleus | 46.58 | 38.66 |
| CDY68624 | Canola | nucleus | 39.44 | 36.39 |
| GSMUA_Achr5P04420_001 | Banana | nucleus | 20.5 | 26.29 |
| GSMUA_Achr1P03660_001 | Banana | nucleus | 22.36 | 24.74 |
| GSMUA_Achr3P13370_001 | Banana | nucleus | 26.4 | 23.81 |
| GSMUA_Achr1P26000_001 | Banana | nucleus | 26.4 | 23.04 |
| GSMUA_Achr7P05170_001 | Banana | nucleus | 27.64 | 22.65 |
| GSMUA_Achr4P20400_001 | Banana | nucleus | 25.47 | 21.35 |
| GSMUA_Achr10P... | Banana | nucleus | 25.78 | 21.17 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr3G26230_001 | EnsemblPlants:GSMUA_Achr3P26230_001 | EnsemblPlants:GSMUA_Achr3T26230_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | UniProt:M0SHY9 |
| PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF203 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 |
| SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI000294D8CA | SEG:seg | : | : |
Description
Homeobox protein knotted-1-like 6 [Source:GMGC_GENE;Acc:GSMUA_Achr3G26230_001]
Coordinates
chr3:-:26156027..26159275
Molecular Weight (calculated)
36342.0 Da
IEP (calculated)
6.134
GRAVY (calculated)
-0.627
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTPSSSAKQ TTATAASAFD RRYCVPNPFL PSDHHENPNL LQAKPDVAST SQIPQGDVDA IKAKIVSHPH FPSANTSLAC LQVGAPPEVA ARLSAVAQEF
101: EMRQRASLIC RDAVADPELD QFMEAYHDML VKYREELSRP LQEAMEFLGR MESQLNSISD NTGSLRIISN DDKFGVCSVE ENQEGSGGEM DIMELDPCTE
201: DQELKHHLLK KYGGYLSSLK QELSKKKKKG KLPKDARQQL LNWWELHYKW PYPSEAQKAA LAESTGLDMK QINNWFINQR KRHWKPSEDM QFVMMDGYHA
301: PNAAALYMDG HFMSEGLYRF GP
101: EMRQRASLIC RDAVADPELD QFMEAYHDML VKYREELSRP LQEAMEFLGR MESQLNSISD NTGSLRIISN DDKFGVCSVE ENQEGSGGEM DIMELDPCTE
201: DQELKHHLLK KYGGYLSSLK QELSKKKKKG KLPKDARQQL LNWWELHYKW PYPSEAQKAA LAESTGLDMK QINNWFINQR KRHWKPSEDM QFVMMDGYHA
301: PNAAALYMDG HFMSEGLYRF GP
001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
Arabidopsis Description
KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.