Factsheet for GSMUA_Achr4P04480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03660_001
GSMUA_Achr1P09570_001
GSMUA_Achr1P19120_001
GSMUA_Achr2P09660_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P09850_001
GSMUA_Achr3P12130_001
GSMUA_Achr3P13490_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr6P04640_001
GSMUA_Achr6P31770_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001
GSMUA_Achr9P05640_001
GSMUA_Achr9P09770_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41410.1	GSMUA_Achr3P09850_001	AT1G06920.1	15781858
AT5G41410.1	GSMUA_Achr1P09570_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr1P19120_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr2P09660_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr3P12130_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr3P13490_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr9P09770_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr1P03660_001	AT1G62990.1	11701881
AT5G41410.1	GSMUA_Achr10P...	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr2P13200_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr3P26230_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr4P03120_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr4P28270_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr4P32230_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr5P01960_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr6P04640_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr7P08050_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr7P27540_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr10P...	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr2P13200_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr3P26230_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr4P03120_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr4P28270_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr4P32230_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr5P01960_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr6P04640_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr7P08050_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr7P27540_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr6P31770_001	AT4G18830.1	15781858
AT5G41410.1	GSMUA_Achr9P05640_001	AT4G18830.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03140_001	Banana	nucleus	9.98	54.55
GSMUA_Achr1P03680_001	Banana	nucleus	31.83	45.27
CDY45383	Canola	nucleus	25.18	40.3
GSMUA_Achr4P12180_001	Banana	nucleus	46.32	37.28
GSMUA_Achr1P06400_001	Banana	nucleus	45.61	37.21
GSMUA_Achr2P04310_001	Banana	nucleus	48.93	36.92
GSMUA_Achr11P...	Banana	plastid	23.04	36.88
GSMUA_Achr5P08840_001	Banana	nucleus	27.32	36.28
GSMUA_Achr4P07450_001	Banana	nucleus	25.89	35.97
GSMUA_Achr1P26900_001	Banana	nucleus	33.73	35.68
GSMUA_Achr4P14670_001	Banana	nucleus	24.47	34.68
GSMUA_Achr2P06410_001	Banana	nucleus	11.88	34.48
GSMUA_Achr10P...	Banana	nucleus	8.31	34.31
VIT_02s0025g00200.t01	Wine grape	nucleus	51.78	33.75
KRH59951	Soybean	nucleus	48.22	31.97
GSMUA_Achr9P18740_001	Banana	nucleus	43.71	31.94
KRH27902	Soybean	nucleus	48.69	31.93
KRH77572	Soybean	nucleus	48.93	31.89
PGSC0003DMT400032122	Potato	nucleus	47.74	31.75
Solyc08g081400.2.1	Tomato	nucleus	47.74	31.21
GSMUA_Achr10P...	Banana	nucleus	30.64	30.86
KRH41225	Soybean	nucleus	47.27	30.8
GSMUA_Achr1P23300_001	Banana	extracellular	30.17	29.4
CDY44476	Canola	nucleus	39.19	29.05
GSMUA_Achr10P...	Banana	plastid	6.65	28.87
AT5G41410.1	Thale cress	nucleus	41.81	28.81
Bra025497.1-P	Field mustard	nucleus	40.14	28.5
GSMUA_Achr3P29230_001	Banana	nucleus	29.45	27.43
GSMUA_Achr6P07130_001	Banana	nucleus	31.35	26.88
GSMUA_Achr7P14960_001	Banana	nucleus	27.08	25.91
GSMUA_Achr9P21580_001	Banana	nucleus	32.07	24.73
GSMUA_Achr4P13590_001	Banana	nucleus	32.78	24.25
GSMUA_Achr5P03130_001	Banana	cytosol	19.0	23.95
GSMUA_Achr7P27440_001	Banana	nucleus	37.77	23.25
GSMUA_Achr4P06630_001	Banana	nucleus	30.17	22.44
GSMUA_Achr2P06420_001	Banana	nucleus	19.24	21.95
GSMUA_Achr6P18180_001	Banana	nucleus	33.02	21.92
GSMUA_Achr5P07020_001	Banana	nucleus	26.84	21.52
GSMUA_AchrUn_...	Banana	nucleus	23.99	17.03
GSMUA_Achr2P19430_001	Banana	nucleus	21.85	17.01
GSMUA_Achr10P...	Banana	nucleus	30.17	16.84
GSMUA_Achr4P02680_001	Banana	nucleus	22.57	16.41
GSMUA_Achr11P...	Banana	plastid	11.64	12.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G04480_001	EnsemblPlants:GSMUA_Achr4P04480_001
EnsemblPlants:GSMUA_Achr4T04480_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0SL15
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF66
SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000296C692	SEG:seg	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G04480_001]

Coordinates

chr4:-:3542656..3544827

Molecular Weight (calculated)

47679.5 Da

IEP (calculated)

8.459

GRAVY (calculated)

-0.634

Length

421 amino acids

Sequence
(BLAST)

001: MLGVPSKRQG SHFMKNFVHR SLPESSNGNF GMGSAVSTWP VDDSSSISLF NCQEGEQLDR KLSLSHFSVK SPDGIGLPDS LQQQQQQLFV HARREHYLKK
101: SKYLKPTQEL LSEFCNIQEG LNSKEGPKQG SRREEGDPSS WQQSLYSMNH LELHKLKAKL FSMLEEVDRR YRKYCEQMKA VVSSFETMAG EGAADIYSTL
201: ASKAMSRHFR RLKDGIVDQI NAVKKAMGET DPTLQHGMVQ QLPWRPQRGL PERSVSILRA WLFEHFLHPY PSDVDKVILA RKAGLSRSQV SNWFINARVR
301: IWKPMVEEMY SEEMKELDAK SNQNPNPNSA LSLVHKPFLN DSESLSSIIN SSHHGVHQPQ QQRVSGADHF GVVDYDVFSS YSNFASDDLR RSGELSMLDG
401: EAQGVPRRTL MGTQLLHDLA G

Best Arabidopsis Sequence Match ( AT4G34610.1 )
(BLAST)

001: MENYPETQFI PGDSMIQNAI VSYSEESAGR ERRTEANNVS ASQERQALSR FGGVPQMQNI GQDFGSWRDQ ASDRNGFQLM SAMAGATGIL QTGQGLSLSL
101: GSQILPGIHQ ISHQNMAPRG NEYATQSFPG GNQNLDVVRT IPNSKYLKAA QQLLDEAVNV KKALKQFQAE GDKNNENPQE PNQSTQDSST NPPADISQSE
201: RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVLRKCLGE QQDGSDGKRV GIISRLKYVD
301: QHLRQQRGFM QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKM
401: SEIGPVAADD EDRAREFSQD QTKPDHGHGY GEETRGMVQG SHMDGRRFMA VEPTYHVADT SRLGRGDVSL TLGLQNSQGQ DNVVAMSSEA YNNFSGVDIY
501: ENAIPGDEME YVNPGSRQNR INSSQLVHDF VA

Arabidopsis Description

BLH6BEL1-like homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O65685]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.