Factsheet for GSMUA_AchrUn_randomP03720_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P19430_001	Banana	nucleus	55.31	60.63
GSMUA_Achr5P03140_001	Banana	nucleus	6.07	46.75
GSMUA_Achr4P02680_001	Banana	nucleus	33.9	34.72
GSMUA_Achr2P06410_001	Banana	nucleus	7.93	32.41
KXG20197	Sorghum	nucleus	25.63	30.77
Zm00001d046223_P006	Maize	nucleus	25.3	30.55
TraesCS7B01G269400.1	Wheat	nucleus	27.82	29.89
TraesCS7D01G364500.1	Wheat	nucleus	27.66	29.82
TraesCS7A01G358300.1	Wheat	nucleus	27.32	29.29
Os02t0226600-01	Rice	nucleus	25.46	28.01
GSMUA_Achr10P...	Banana	nucleus	19.73	27.99
GSMUA_Achr1P03680_001	Banana	nucleus	13.83	27.7
Os06t0562300-00	Rice	nucleus	24.96	27.16
Zm00001d016298_P001	Maize	nucleus	24.96	27.01
EES04785	Sorghum	nucleus	24.96	26.24
GSMUA_Achr11P...	Banana	plastid	11.64	26.24
HORVU7Hr1G088090.4	Barley	nucleus	24.45	26.17
GSMUA_Achr3P29230_001	Banana	nucleus	19.9	26.11
Zm00001d002249_P001	Maize	nucleus	15.18	25.57
GSMUA_Achr10P...	Banana	nucleus	4.38	25.49
GSMUA_Achr6P07130_001	Banana	nucleus	20.74	25.05
GSMUA_Achr5P08840_001	Banana	nucleus	12.98	24.29
GSMUA_Achr4P04480_001	Banana	nucleus	17.03	23.99
GSMUA_Achr1P23300_001	Banana	extracellular	17.2	23.61
GSMUA_Achr4P14670_001	Banana	nucleus	11.8	23.57
GSMUA_Achr1P26900_001	Banana	nucleus	15.51	23.12
GSMUA_Achr4P07450_001	Banana	nucleus	11.8	23.1
GSMUA_Achr9P21580_001	Banana	nucleus	19.9	21.61
GSMUA_Achr4P06630_001	Banana	nucleus	20.4	21.38
GSMUA_Achr5P03130_001	Banana	cytosol	11.8	20.96
GSMUA_Achr4P13590_001	Banana	nucleus	19.9	20.74
GSMUA_Achr6P18180_001	Banana	nucleus	21.59	20.19
GSMUA_Achr2P06420_001	Banana	nucleus	12.31	19.78
GSMUA_Achr1P06400_001	Banana	nucleus	17.2	19.77
GSMUA_Achr4P12180_001	Banana	nucleus	17.2	19.5
GSMUA_Achr7P14960_001	Banana	nucleus	14.17	19.09
GSMUA_Achr9P18740_001	Banana	nucleus	17.54	18.06
GSMUA_Achr2P04310_001	Banana	nucleus	16.53	17.56
GSMUA_Achr5P07020_001	Banana	nucleus	15.35	17.33
GSMUA_Achr7P27440_001	Banana	nucleus	18.72	16.23
GSMUA_Achr10P...	Banana	plastid	2.53	15.46
GSMUA_Achr10P...	Banana	nucleus	17.54	13.79
GSMUA_Achr11P...	Banana	plastid	8.26	12.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG03720_001	EnsemblPlants:GSMUA_AchrUn_randomP03720_001
EnsemblPlants:GSMUA_AchrUn_randomT03720_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0U634
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF92
SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI0002950D17	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG03720_001]

Coordinates

chrchrUn_random:-:17411041..17414697

Molecular Weight (calculated)

65809.6 Da

IEP (calculated)

6.134

GRAVY (calculated)

-0.381

Length

593 amino acids

Sequence
(BLAST)

001: MENDVFNGSL PIFNHGHMIV DPVSSYMLSG PLVQSGLPDH NSNRQILAGN PMVSTLQEEA IDSIYLTKSG VMACSDVSFS RNIPRIGNDS VNGPIGNVGL
101: REHLPETSLS AASVANLYSS TNYLVENIIK VGTASTLDLP SEEMTVPAST DIHNSHNSSL SASPHCNFGT QHDLSLLAPK NGTIGCMWNQ NELLDHQVLL
201: SKTFSVVRPS YHVTGSSQPG WNFYEYESNW NFNHPCGNTA RAPGSELSLS LGSCQPSVTD MGNNGDQCSE LSCSAVTQVA SADSVRPPTE FQACNHAIQN
301: PVQDFRSGMT QRETIPCTEK PSFYQGCSLV QLSHMLLGSK YLQAVEEVLS EIATYAVEDL QRVDDSPDEK MSISSSCSTV RELPISVSGE LLLSFGDTEP
401: LAGMDSQKFQ EANRKKTELL SMLQLVDHGY NRCLDQIQNV ITSFICISQS GTSETHARFA LRTISALYKS LRKRITSQIL FISQQPSTEP MKEKERSFES
501: SLLQKQWALQ QLRKSDHQSW RPQRGLPEKS VSVLRAWMFE NFLHPYPKDN DKHVLAVKSG LTRSQVSNWF INARVRLWKP MIEEMYAELN KKQ

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.