Factsheet for HORVU7Hr1G088090.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G084680.1
HORVU6Hr1G028610.2
HORVU7Hr1G114650.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	HORVU4Hr1G084680.1	AT1G62990.1	15781858
AT4G32980.1	HORVU6Hr1G028610.2	AT5G11060.1	15781858
AT4G32980.1	HORVU7Hr1G114650.2	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G364500.1	Wheat	nucleus	83.39	84.0
TraesCS7B01G269400.1	Wheat	nucleus	83.39	83.7
TraesCS7A01G358300.1	Wheat	nucleus	82.49	82.64
Os06t0562300-00	Rice	nucleus	49.82	50.64
Zm00001d046223_P006	Maize	nucleus	42.6	48.07
KXG20197	Sorghum	nucleus	42.78	47.98
CDX75307	Canola	nucleus	14.26	35.59
VIT_04s0008g00880.t01	Wine grape	nucleus	27.26	25.64
CDX75313	Canola	nucleus	21.12	25.11
GSMUA_Achr2P19430_001	Banana	nucleus	24.37	24.95
Bra011403.1-P	Field mustard	nucleus	20.94	24.89
CDX68927	Canola	nucleus	20.4	24.51
Bra037031.1-P	Field mustard	nucleus	19.31	24.49
GSMUA_AchrUn_...	Banana	nucleus	26.17	24.45
CDY13511	Canola	nucleus	18.95	24.03
AT4G32980.1	Thale cress	nucleus	20.4	23.89
PGSC0003DMT400076995	Potato	nucleus	23.1	23.7
KRH52190	Soybean	nucleus	22.92	23.13
KRH05496	Soybean	nucleus	23.83	23.12
Solyc08g065420.2.1	Tomato	nucleus	23.1	22.9
CDX72383	Canola	nucleus	18.59	22.79
KRH61499	Soybean	nucleus	23.29	22.43
HORVU3Hr1G072010.1	Barley	mitochondrion	4.87	21.09
HORVU4Hr1G003750.1	Barley	nucleus	11.55	18.71
CDX68925	Canola	cytosol	5.78	17.68
CDX68906	Canola	nucleus	7.4	15.83
HORVU4Hr1G020710.1	Barley	nucleus	14.8	15.77
HORVU1Hr1G049760.1	Barley	nucleus	15.34	14.26
HORVU4Hr1G003800.7	Barley	nucleus	15.7	13.51
HORVU4Hr1G074250.1	Barley	nucleus	14.08	13.24
HORVU5Hr1G001090.1	Barley	nucleus	14.98	12.79
HORVU4Hr1G084590.2	Barley	nucleus	14.26	12.7
HORVU4Hr1G010430.6	Barley	nucleus	17.15	11.74
HORVU1Hr1G072850.1	Barley	nucleus, plastid	14.26	9.95
HORVU3Hr1G085720.1	Barley	nucleus, plastid	12.64	9.3

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	UniProt:A0A287X813	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU7Hr1G088090
EnsemblPlants:HORVU7Hr1G088090.4	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920
PFAM:PF07526	InterPro:POX_dom	PANTHER:PTHR11850	PANTHER:PTHR11850:SF200	SUPFAM:SSF46689	UniParc:UPI000B47147F
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:532352311..532355984

Molecular Weight (calculated)

59880.2 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.436

Length

554 amino acids

Sequence
(BLAST)

001: MSSNPSYQQQ LGLDAMNTCF FGGGGMIGSE APFFYPSMPH DVHFGSGSGS GGAEVAAHFM ASNAVMVANQ LVWPGAPSQD SHLASMSTDE MNDDAHAVAG
101: ESCSTVHSML HSASADFFQY APAEVTIAQP SKMAKLIAGE PHCSWLYDGP GAASTHEPYY LTAFSGGTDF PDPVAAVASG LSLRLGARSS SVTMASMPEQ
201: SSEVSCSGLT HVNSEGFGYQ QPQAVSAHAG AGQFHLPPYG DDELRHVYPQ MYSRPPHFSQ VLPRSGYAHI AQELLNGFAG CMLKDVAEMS GDSVSGAGSE
301: ASLLLSSSCS ARTPSSVSSN HLMLPSEEQS ADGGRWMEAQ RARNDLLKLL QLMDQRCNRC FDDIQTTASK FSSMLAHPGG GGGAIAPPPF AQRAVSAVYQ
401: RLRKRITGLI VALAQRSGDA SSLADKERSW ESSFIQKHWA LQQLRRGDQQ SWRPQRGLPE KSVAVLKAWM FENFLRPYPK DHEKDMLAAR SGLSRSQVRL
501: QLVHQRARPA VEADDRGDVR GAQEELGARR RRRASQHQRR RRLGGRGWNC TESS

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.