Factsheet for GSMUA_Achr2P19430_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	60.63	55.31
GSMUA_Achr5P03140_001	Banana	nucleus	6.84	48.05
GSMUA_Achr2P06410_001	Banana	nucleus	8.69	32.41
GSMUA_Achr4P02680_001	Banana	nucleus	32.16	30.05
KXG20197	Sorghum	nucleus	26.06	28.54
Zm00001d046223_P006	Maize	nucleus	25.88	28.51
TraesCS7A01G358300.1	Wheat	nucleus	28.1	27.49
TraesCS7D01G364500.1	Wheat	nucleus	27.91	27.45
GSMUA_Achr10P...	Banana	nucleus	5.18	27.45
TraesCS7B01G269400.1	Wheat	nucleus	27.91	27.36
GSMUA_Achr11P...	Banana	plastid	12.94	26.62
Os02t0226600-01	Rice	nucleus	25.88	25.97
Os06t0562300-00	Rice	nucleus	26.06	25.87
GSMUA_Achr1P03680_001	Banana	nucleus	14.05	25.68
Zm00001d016298_P001	Maize	nucleus	24.95	24.64
HORVU7Hr1G088090.4	Barley	nucleus	24.95	24.37
GSMUA_Achr10P...	Banana	nucleus	18.67	24.16
EES04785	Sorghum	nucleus	25.14	24.11
GSMUA_Achr5P08840_001	Banana	nucleus	13.68	23.34
GSMUA_Achr1P26900_001	Banana	nucleus	17.01	23.12
GSMUA_Achr1P23300_001	Banana	extracellular	18.3	22.92
Zm00001d002249_P001	Maize	nucleus	14.79	22.73
GSMUA_Achr4P14670_001	Banana	nucleus	12.2	22.22
GSMUA_Achr3P29230_001	Banana	nucleus	18.3	21.9
GSMUA_Achr4P04480_001	Banana	nucleus	17.01	21.85
GSMUA_Achr4P07450_001	Banana	nucleus	12.2	21.78
GSMUA_Achr6P07130_001	Banana	nucleus	18.67	20.57
GSMUA_Achr9P21580_001	Banana	nucleus	20.15	19.96
GSMUA_Achr5P03130_001	Banana	cytosol	12.2	19.76
GSMUA_Achr1P06400_001	Banana	nucleus	18.11	18.99
GSMUA_Achr4P13590_001	Banana	nucleus	19.96	18.98
GSMUA_Achr7P14960_001	Banana	nucleus	15.34	18.86
GSMUA_Achr2P06420_001	Banana	nucleus	12.75	18.7
GSMUA_Achr4P12180_001	Banana	nucleus	17.93	18.55
GSMUA_Achr4P06630_001	Banana	nucleus	18.85	18.02
GSMUA_Achr6P18180_001	Banana	nucleus	19.96	17.03
GSMUA_Achr2P04310_001	Banana	nucleus	17.19	16.67
GSMUA_Achr9P18740_001	Banana	nucleus	17.38	16.32
GSMUA_Achr5P07020_001	Banana	nucleus	15.53	16.0
GSMUA_Achr10P...	Banana	plastid	2.77	15.46
GSMUA_Achr7P27440_001	Banana	nucleus	19.22	15.2
GSMUA_Achr10P...	Banana	nucleus	19.22	13.79
GSMUA_Achr11P...	Banana	plastid	8.32	11.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G19430_001	EnsemblPlants:GSMUA_Achr2P19430_001
EnsemblPlants:GSMUA_Achr2T19430_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0S9D4
PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF92
SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI0002969CB7	SEG:seg	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G19430_001]

Coordinates

chr2:-:19503226..19505998

Molecular Weight (calculated)

59433.5 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.368

Length

541 amino acids

Sequence
(BLAST)

001: MESDIFNGSL SVFNHNLMIL DSASSYVLSD SLVQSSLPHH NSHRQILQEV TDDIHLIRND SMECSDVPSS RYINQTGNAS CSIASLFSST TCLPENIIRV
101: DATSNLGFPP EELRVPISNN LPHSASPHCD FGIQHDPGLL ASKNEATLFA ELDYSKTCSV VHPSYHVTGS SGPGWNFHNS APDGELCLRI GQSSVPDMGN
201: VADQCSERIK SADNSNLPTD FGACNHAFRK SLHDFGSGMA REEATTHTEK FYSDVGSSGP VHFSLVLLRS KYLNAIQEVL GEAVSYALEN ASAAKMSFSS
301: SCSSVREIPI PVSEELPLSF GQTEPLGSMD SGYSQEAKAQ LLTLLQLVDH SYNHCLDQIQ NAVTSFLCLS QSSTSENTPA RFALHTVSSL YKSLRKRITS
401: QILTIDQHPS IAWANENEGS YESSLIQKQW ALRQLKKSGQ QSWRPQRGLP EKSVSVLRAW LFENFLHPYP KDNEKHSLAI KSGLTKGQVS NWFINARVRI
501: WKPMIEEMCA ELNKKRADGG AGESRSHGNV GVQRLGSVSV E

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.