Factsheet for GSMUA_Achr3P29230_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03660_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr6P04640_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16400.1	GSMUA_Achr1P03660_001	AT1G62990.1	15781858
AT2G16400.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858
AT2G16400.1	GSMUA_Achr10P...	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr2P13200_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr3P26230_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr4P03120_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr4P28270_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr4P32230_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr5P01960_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr6P04640_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr7P08050_001	AT4G08150.1	21798944
AT2G16400.1	GSMUA_Achr7P27540_001	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P21580_001	Banana	nucleus	70.58	58.42
GSMUA_Achr5P03140_001	Banana	nucleus	9.29	54.55
GSMUA_Achr4P13590_001	Banana	nucleus	66.81	53.08
GSMUA_Achr4P06630_001	Banana	nucleus	65.04	51.94
GSMUA_Achr1P23300_001	Banana	extracellular	45.35	47.45
Bra013075.1-P	Field mustard	nucleus	40.93	43.43
CDY46209	Canola	nucleus	36.06	43.12
Bra013076.1-P	Field mustard	nucleus	40.93	41.11
CDY02261	Canola	nucleus	40.71	40.98
CDX89711	Canola	nucleus	41.15	40.88
GSMUA_Achr10P...	Banana	nucleus	35.62	38.52
AT2G16400.1	Thale cress	nucleus	40.93	38.38
Bra001976.1-P	Field mustard	nucleus	37.61	38.29
GSMUA_Achr2P06410_001	Banana	nucleus	12.17	37.93
GSMUA_Achr1P03680_001	Banana	nucleus	24.78	37.84
VIT_03s0038g00050.t01	Wine grape	nucleus	57.08	37.34
Bra017666.1-P	Field mustard	nucleus	42.7	36.55
AT4G34610.3	Thale cress	nucleus	42.26	35.9
GSMUA_Achr5P08840_001	Banana	nucleus	24.11	34.38
TraesCS4D01G022600.1	Wheat	nucleus	48.45	34.33
TraesCS4A01G289400.1	Wheat	nucleus	48.45	34.33
TraesCS4B01G025500.1	Wheat	nucleus	48.45	34.27
CDX71279	Canola	nucleus	29.2	34.02
HORVU4Hr1G003800.7	Barley	nucleus	48.23	33.85
GSMUA_Achr1P26900_001	Banana	nucleus	29.42	33.42
Os12t0636200-01	Rice	nucleus	47.57	33.23
KXG24130	Sorghum	nucleus	48.23	33.13
Os03t0680800-02	Rice	nucleus	49.12	32.89
Zm00001d013547_P002	Maize	nucleus	46.46	32.86
GSMUA_Achr6P07130_001	Banana	nucleus	35.62	32.79
GSMUA_Achr4P07450_001	Banana	nucleus	21.9	32.67
GSMUA_Achr4P14670_001	Banana	nucleus	21.46	32.66
EER91079	Sorghum	nucleus	46.24	32.2
Zm00001d033378_P003	Maize	nucleus	46.24	32.1
HORVU5Hr1G001090.1	Barley	nucleus	45.58	31.74
TraesCS5D01G013300.1	Wheat	nucleus	45.58	31.69
TraesCS5A01G007800.1	Wheat	nucleus	45.58	31.69
GSMUA_Achr11P...	Banana	plastid	18.36	31.56
TraesCS5B01G006400.1	Wheat	nucleus	45.8	30.76
Zm00001d031182_P002	Maize	nucleus	44.91	30.39
GSMUA_Achr4P04480_001	Banana	nucleus	27.43	29.45
CDY45321	Canola	nucleus, plastid	42.7	28.18
GSMUA_Achr5P03130_001	Banana	cytosol	20.8	28.14
GSMUA_Achr2P06420_001	Banana	nucleus	22.79	27.91
GSMUA_Achr10P...	Banana	nucleus	6.19	27.45
GSMUA_Achr6P18180_001	Banana	nucleus	38.5	27.44
GSMUA_Achr4P12180_001	Banana	nucleus	30.31	26.2
GSMUA_Achr1P06400_001	Banana	nucleus	29.87	26.16
GSMUA_Achr2P04310_001	Banana	nucleus	30.09	24.37
GSMUA_Achr10P...	Banana	plastid	5.09	23.71
GSMUA_Achr9P18740_001	Banana	nucleus	29.2	22.92
GSMUA_Achr7P27440_001	Banana	nucleus	32.3	21.34
GSMUA_Achr7P14960_001	Banana	nucleus	20.35	20.91
GSMUA_AchrUn_...	Banana	nucleus	26.11	19.9
GSMUA_Achr2P19430_001	Banana	nucleus	21.9	18.3
GSMUA_Achr4P02680_001	Banana	nucleus	22.79	17.79
GSMUA_Achr5P07020_001	Banana	nucleus	20.35	17.52
GSMUA_Achr10P...	Banana	nucleus	25.0	14.99
GSMUA_Achr11P...	Banana	plastid	9.96	11.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G29230_001
EnsemblPlants:GSMUA_Achr3P29230_001	EnsemblPlants:GSMUA_Achr3T29230_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:M0SIT9	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF65	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000296A44A	SEG:seg

Description

homeodomain protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G29230_001]

Coordinates

chr3:-:28448426..28452134

Molecular Weight (calculated)

50592.3 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.567

Length

452 amino acids

Sequence
(BLAST)

001: MYLSFSNSGS YADALAGSTQ TQQNRNELPV TTTIISQGMA VGNSNEVTSL HGDHAYNTWK DGRNEMLFMH SVEGSINGAD VLIHPDDHQV SLQTQLGIIN
101: GQSSSLQHSN VSTMQNQALS LSLSTQMPVP SIQYHPTSLD ISFIDSHQLT SGTVGPLREE SFQNKSMHGN VSPNELSSLT SLIPNSKYLR PAQELLDEVV
201: NVRKALRPKT DRSQMMASNP QEAAANCSSG LSASEKEDLQ NKVSNLLQML DEVDKRYAQY YHQMQIIVSW FDAIAGCGAA KPYTVLALQT ISRHFRCVRD
301: AISGQIQATR KSLGEPEDLS GSSSGLSRLR YIDQQLRQQR TLHQYGLMQQ HSWRPQRGLP ESSVSILRAW LFEHFLHPYP KDSEKLVLAR QTGLTRSQVS
401: NWFINARVRL WKPMIENMYK EEFGDTEIDS NSSLSNPPKL NEDIQPSEDH ED

Best Arabidopsis Sequence Match ( AT2G16400.1 )
(BLAST)

001: MATYYKTGSS EIYSRPEFVP GNAMNYTNSF TETFPRDSTN NVSPSKEIQV LSSLGGVSQM VEIQDSGSWR DQEDNDRNRF PVMRRLGLSS QIETSRGNNN
101: NEYATQVVSG FTRTIHNSKY LKAAQELLDE TVNVKKALKQ FQPEGDKINE VKEKNLQTNT AEIPQAERQE LQSKLSKLLS ILDEVDRNYK QYYHQMQIVV
201: SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAISGQILV IRKSLGGEQD GSDGRGVGIS RLRNVDQQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLVL
301: RAWLFEHFLH PYPKDSDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYKEEFTDAL QENDPNQSSE NTPEITEIQE LQTESSSNNG HVPGVASSSM
401: RQNTVAHGGD RFMMVTDMTR NGNGGMSLTL GIQNSDARGD VPMSGGIDNY KNTISGTDLQ YLNSRNHQHQ IGSSQLLHDF VA

Arabidopsis Description

BLH7BEL1-like homeodomain protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.