Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027431_P002 | Maize | nucleus | 83.85 | 78.71 |
| Os03t0123500-02 | Rice | nucleus | 84.19 | 78.03 |
| TraesCS4B01G346100.1 | Wheat | nucleus | 83.51 | 77.88 |
| TraesCS5A01G515000.1 | Wheat | nucleus | 83.51 | 77.88 |
| KRH27981 | Soybean | nucleus | 74.57 | 77.78 |
| TraesCS4D01G341000.1 | Wheat | nucleus | 82.82 | 77.49 |
| KRH77464 | Soybean | nucleus | 74.57 | 77.22 |
| HORVU4Hr1G084680.1 | Barley | nucleus | 83.51 | 77.14 |
| VIT_02s0025g04630.t01 | Wine grape | nucleus | 76.63 | 76.63 |
| Zm00001d048471_P001 | Maize | nucleus | 83.16 | 76.1 |
| KXG40306 | Sorghum | nucleus | 84.19 | 75.85 |
| KRH03996 | Soybean | nucleus | 74.91 | 74.66 |
| KRH57265 | Soybean | nucleus | 74.91 | 74.4 |
| CDX93852 | Canola | nucleus | 56.7 | 74.32 |
| CDY66559 | Canola | nucleus | 73.2 | 72.45 |
| Bra036636.1-P | Field mustard | nucleus | 73.2 | 72.45 |
| AT1G62990.1 | Thale cress | nucleus | 72.16 | 72.16 |
| CDY64892 | Canola | nucleus | 72.85 | 72.11 |
| Solyc08g080120.2.1 | Tomato | nucleus | 75.6 | 70.97 |
| PGSC0003DMT400058528 | Potato | nucleus | 75.94 | 70.83 |
| CDY45968 | Canola | nucleus | 71.13 | 70.65 |
| Bra027006.1-P | Field mustard | nucleus | 70.45 | 69.49 |
| GSMUA_Achr5P04420_001 | Banana | nucleus | 47.08 | 54.58 |
| GSMUA_Achr3P13370_001 | Banana | nucleus | 61.17 | 49.86 |
| GSMUA_Achr1P26000_001 | Banana | nucleus | 61.17 | 48.24 |
| GSMUA_Achr4P20400_001 | Banana | nucleus | 61.51 | 46.61 |
| GSMUA_Achr7P05170_001 | Banana | nucleus | 62.2 | 46.06 |
| GSMUA_Achr10P... | Banana | nucleus | 60.82 | 45.15 |
| GSMUA_Achr7P08050_001 | Banana | nucleus | 26.12 | 28.57 |
| GSMUA_Achr5P01960_001 | Banana | nucleus | 18.56 | 28.12 |
| GSMUA_Achr4P28270_001 | Banana | nucleus | 26.12 | 28.04 |
| GSMUA_Achr2P00410_001 | Banana | nucleus | 29.21 | 27.87 |
| GSMUA_Achr8P10550_001 | Banana | nucleus | 29.21 | 27.69 |
| GSMUA_Achr11P... | Banana | nucleus | 27.84 | 26.3 |
| GSMUA_Achr10P... | Banana | nucleus | 23.37 | 26.15 |
| GSMUA_Achr4P03120_001 | Banana | nucleus | 23.71 | 23.79 |
| GSMUA_Achr4P32230_001 | Banana | nucleus | 28.18 | 23.77 |
| GSMUA_Achr7P27540_001 | Banana | nucleus | 28.18 | 23.43 |
| GSMUA_Achr3P26230_001 | Banana | nucleus | 24.74 | 22.36 |
| GSMUA_Achr2P13200_001 | Banana | nucleus | 26.12 | 21.65 |
| GSMUA_Achr6P04640_001 | Banana | nucleus | 26.12 | 21.29 |
| GSMUA_Achr4P14600_001 | Banana | nucleus | 26.12 | 19.59 |
| GSMUA_Achr8P05110_001 | Banana | nucleus | 17.18 | 16.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010089 |
| GO:GO:0010192 | GO:GO:0045892 | GO:GO:2000652 | EnsemblPlantsGene:GSMUA_Achr1G03660_001 | EnsemblPlants:GSMUA_Achr1P03660_001 | EnsemblPlants:GSMUA_Achr1T03660_001 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 |
| InterPro:KNOX2 | UniProt:M0RWS4 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | PFscan:PS50071 |
| PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF74 | SMART:SM00389 | SMART:SM01255 | SMART:SM01256 |
| SUPFAM:SSF46689 | UniParc:UPI00029602DA | SEG:seg | : | : | : |
Description
Homeobox protein knotted-1-like 3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G03660_001]
Coordinates
chr1:+:3029512..3032771
Molecular Weight (calculated)
32889.3 Da
IEP (calculated)
6.187
GRAVY (calculated)
-0.568
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSDQGLGME MGVGAGGECS SSAAAAEQQL LKAEMAVHPL WEQLLGAHVG CLRVATPIDH LPLIDAQLAQ SHHLVRSYAA GRRPLLSPHE KQELDSFLAQ
101: YLMVLCSFRE QLQQHVRVHA VEAVIACREI EQSLQDLTGA TLEEGSGATM SDDEDELQMD CPLDISVEGH DMMGFGPLLP TESERSLMER VRQELKIELK
201: QGFRSRIEDV REEILRKRRA GKLPGDTTSI LKQWWQQNSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNSSQ SATTLKSKRK K
101: YLMVLCSFRE QLQQHVRVHA VEAVIACREI EQSLQDLTGA TLEEGSGATM SDDEDELQMD CPLDISVEGH DMMGFGPLLP TESERSLMER VRQELKIELK
201: QGFRSRIEDV REEILRKRRA GKLPGDTTSI LKQWWQQNSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNSSQ SATTLKSKRK K
001: MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H
Arabidopsis Description
KNAT7Homeobox protein knotted-1-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.