Factsheet for Bra027006.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra000872.1-P
Bra001976.1-P
Bra002657.1-P
Bra006085.1-P
Bra011317.1-P
Bra011403.1-P
Bra013872.1-P
Bra018081.1-P
Bra018316.1-P
Bra018539.1-P
Bra021632.1-P
Bra022796.1-P
Bra023965.1-P
Bra025497.1-P
Bra027006.1-P
Bra027050.1-P
Bra031546.1-P
Bra033769.1-P
Bra036256.1-P
Bra036636.1-P
Bra037031.1-P
Bra040948.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62990.1	Bra031546.1-P	AT1G06920.1	15781858
AT1G62990.1	Bra027050.1-P	AT1G62360.1	15781858
AT1G62990.1	Bra027006.1-P	AT1G62990.1	15781858
AT1G62990.1	Bra036636.1-P	AT1G62990.1	15781858
AT1G62990.1	Bra001976.1-P	AT2G16400.1	15781858
AT1G62990.1	Bra001976.1-P	AT2G16400.1	21798944
AT1G62990.1	Bra018316.1-P	AT2G30400.1	15781858
AT1G62990.1	Bra021632.1-P	AT2G30400.1	15781858
AT1G62990.1	Bra022796.1-P	AT2G30400.1	15781858
AT1G62990.1	Bra018081.1-P	AT3G48150.1	21798944
AT1G62990.1	Bra033769.1-P	AT3G48150.1	21798944
AT1G62990.1	Bra000872.1-P	AT4G02590.1	21798944
AT1G62990.1	Bra018539.1-P	AT4G02590.1	21798944
AT1G62990.1	Bra036256.1-P	AT4G02590.1	21798944
AT1G62990.1	Bra000638.1-P	AT4G08150.1	15781858
AT1G62990.1	Bra000638.1-P	AT4G08150.1	21798944
AT1G62990.1	Bra013872.1-P	AT4G25200.1	21798944
AT1G62990.1	Bra011317.1-P	AT4G32040.1	15781858
AT1G62990.1	Bra023965.1-P	AT4G32040.1	15781858
AT1G62990.1	Bra011403.1-P	AT4G32980.1	15781858
AT1G62990.1	Bra037031.1-P	AT4G32980.1	15781858
AT1G62990.1	Bra040948.1-P	AT5G01840.1	15781858
AT1G62990.1	Bra006085.1-P	AT5G11060.1	15781858
AT1G62990.1	Bra025497.1-P	AT5G41410.1	11701881
AT1G62990.1	Bra002657.1-P	AT5G58360.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45968	Canola	nucleus	96.27	96.93
Bra036636.1-P	Field mustard	nucleus	93.22	93.54
AT1G62990.1	Thale cress	nucleus	91.53	92.78
KRH27981	Soybean	nucleus	76.27	80.65
KRH77464	Soybean	nucleus	75.25	79.0
VIT_02s0025g04630.t01	Wine grape	nucleus	76.61	77.66
KRH03996	Soybean	nucleus	75.25	76.03
KRH57265	Soybean	nucleus	75.25	75.77
PGSC0003DMT400058528	Potato	nucleus	77.97	73.72
Solyc08g080120.2.1	Tomato	nucleus	76.95	73.23
GSMUA_Achr1P03660_001	Banana	nucleus	69.49	70.45
Zm00001d027431_P002	Maize	nucleus	70.51	67.1
Os03t0123500-02	Rice	nucleus	70.85	66.56
Zm00001d048471_P001	Maize	nucleus	70.85	65.72
TraesCS4B01G346100.1	Wheat	nucleus	68.81	65.06
TraesCS5A01G515000.1	Wheat	nucleus	68.81	65.06
KXG40306	Sorghum	nucleus	71.19	65.02
TraesCS4D01G341000.1	Wheat	nucleus	68.47	64.95
HORVU4Hr1G084680.1	Barley	nucleus	68.81	64.44
Bra006085.1-P	Field mustard	nucleus	60.68	46.37
Bra028554.1-P	Field mustard	nucleus	60.34	45.99
Bra011317.1-P	Field mustard	nucleus	58.31	45.99
Bra023965.1-P	Field mustard	nucleus	57.97	44.65
Bra009826.1-P	Field mustard	nucleus	58.98	42.03
Bra020491.1-P	Field mustard	nucleus	51.19	38.42
Bra024591.1-P	Field mustard	nucleus	28.47	25.61
Bra016348.1-P	Field mustard	nucleus	26.78	25.16
Bra007920.1-P	Field mustard	nucleus	27.46	24.77
Bra000638.1-P	Field mustard	nucleus	27.46	20.93
Bra027050.1-P	Field mustard	nucleus	24.75	19.11
Bra024592.1-P	Field mustard	nucleus	12.88	17.92
Bra024593.1-P	Field mustard	nucleus	11.86	16.75

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EnsemblPlantsGene:Bra027006	EnsemblPlants:Bra027006.1	EnsemblPlants:Bra027006.1-P	InterPro:ELK_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	UniProt:M4EDZ6	PFAM:PF03790	PFAM:PF03791
PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF74	SMART:SM00389
SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI00025424F6	SEG:seg

Description

AT1G62990 (E=3e-148) KNAT7, IXR11 | KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7); DNA binding / transcription activator/ transcription factor

Coordinates

chrA09:-:7506257..7512318

Molecular Weight (calculated)

33310.5 Da

IEP (calculated)

6.344

GRAVY (calculated)

-0.581

Length

295 amino acids

Sequence
(BLAST)

001: MNMEEAALGM IGATVGGGDG DAVLVAEQNR QMKGEIASHT MCEQLLAAHV ACLRVATPID QLPIIEAQLS HSEHLLRSYA STPVGFSHHD RHELDNFLAQ
101: YVMILCSFKE QLQQHVRVHA VEAVMACREI ENNLHSLTGV TLGEGSGATM SEDEDDLQMD FSSDNSGVDF NGGHDTTGFG PLLPTESERS LMERVRQELK
201: IELKQGFKSR IEDVREEIMR KRRAGKLPGD TTTLLKNWWQ QHCKWPYPTE DDKAKLVEET GLQLKQINNW FINQRKRNWH SNSHSLTSLK SKRKH

Best Arabidopsis Sequence Match ( AT1G62990.1 )
(BLAST)

001: MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H

Arabidopsis Description

KNAT7Homeobox protein knotted-1-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.