Factsheet for Bra018539.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000276.1-P
Bra004712.1-P
Bra006236.1-P
Bra008673.1-P
Bra008782.1-P
Bra013885.1-P
Bra016854.1-P
Bra019176.1-P
Bra019509.1-P
Bra023448.1-P
Bra025066.1-P
Bra033788.1-P
Bra035058.1-P
Bra039224.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	Bra035058.1-P	AT1G78680.1	21798944
AT4G02590.1	Bra039224.1-P	AT2G24020.1	21798944
AT4G02590.1	Bra000276.1-P	AT2G42870.1	21798944
AT4G02590.1	Bra004712.1-P	AT2G42870.1	21798944
AT4G02590.1	Bra016854.1-P	AT2G42870.1	21798944
AT4G02590.1	Bra019509.1-P	AT3G47640.1	21798944
AT4G02590.1	Bra033788.1-P	AT3G47640.1	21798944
AT4G02590.1	Bra013885.1-P	AT4G25315.1	21798944
AT4G02590.1	Bra019176.1-P	AT4G25315.1	21798944
AT4G02590.1	Bra006236.1-P	AT5G14070.1	21798944
AT4G02590.1	Bra008782.1-P	AT5G14070.1	21798944
AT4G02590.1	Bra023448.1-P	AT5G14070.1	21798944
AT4G02590.1	Bra008673.1-P	AT5G15802.1	21798944
AT4G02590.1	Bra025066.1-P	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036256.1-P	Field mustard	nucleus	81.1	90.35
CDX97278	Canola	nucleus	97.64	82.94
AT4G02590.1	Thale cress	nucleus	88.58	72.58
Os07t0182200-01	Rice	cytosol	37.8	70.59
Bra000872.1-P	Field mustard	nucleus	85.43	70.23
KRH55381	Soybean	cytosol	18.11	66.67
Bra033368.1-P	Field mustard	nucleus	79.92	65.27
KRH32094	Soybean	nucleus	71.26	63.96
VIT_07s0141g00220.t01	Wine grape	nucleus	71.65	62.98
KRG95612	Soybean	nucleus	71.65	62.33
KRH67287	Soybean	nucleus	70.47	61.3
Solyc09g065820.2.1	Tomato	nucleus	72.83	61.26
PGSC0003DMT400049768	Potato	nucleus	72.83	61.26
KXG37359	Sorghum	nucleus	57.09	51.06
Zm00001d013073_P002	Maize	nucleus	57.09	50.88
OQU88567	Sorghum	nucleus	55.12	50.54
TraesCS5B01G445900.1	Wheat	nucleus	55.51	50.18
TraesCS5D01G449200.1	Wheat	nucleus	55.51	50.18
Os03t0797600-01	Rice	nucleus	57.48	49.66
GSMUA_Achr4P21070_001	Banana	nucleus	58.27	49.33
Zm00001d018967_P001	Maize	nucleus	54.72	48.77
GSMUA_Achr5P03100_001	Banana	nucleus	51.97	48.18
TraesCS5A01G441900.1	Wheat	nucleus	52.76	47.69
HORVU5Hr1G106310.3	Barley	nucleus	54.33	44.23
GSMUA_Achr9P25560_001	Banana	nucleus	58.66	42.21
Bra011237.1-P	Field mustard	plastid	35.83	42.13
Bra020398.1-P	Field mustard	nucleus	37.4	33.93
Bra002679.1-P	Field mustard	nucleus	36.61	32.18
Bra006788.1-P	Field mustard	nucleus	35.83	30.33
Bra032111.1-P	Field mustard	nucleus	39.37	28.74
Bra007863.1-P	Field mustard	nucleus	37.8	28.4
Bra012133.1-P	Field mustard	nucleus, plastid	14.17	16.82
Bra037312.1-P	Field mustard	nucleus	12.6	15.31
Bra010591.1-P	Field mustard	nucleus, plastid	16.14	12.02
Bra011740.1-P	Field mustard	nucleus, plastid	15.75	11.3
Bra004489.1-P	Field mustard	nucleus	16.54	10.5
Bra003483.1-P	Field mustard	nucleus	12.6	10.42
Bra037742.1-P	Field mustard	nucleus	16.54	10.34
Bra000560.1-P	Field mustard	nucleus	15.35	10.05
Bra000283.1-P	Field mustard	nucleus	16.14	9.93
Bra007430.1-P	Field mustard	nucleus	16.54	9.86
Bra000436.1-P	Field mustard	nucleus	15.35	9.65
Bra031668.1-P	Field mustard	nucleus	16.14	8.33
Bra020017.1-P	Field mustard	nucleus	16.14	8.3
Bra007660.1-P	Field mustard	nucleus	12.6	7.58
Bra011061.1-P	Field mustard	nucleus	12.99	6.38
Bra011062.1-P	Field mustard	cytosol	10.63	5.9

Protein Annotations

EnsemblPlants:Bra018539.1	EnsemblPlants:Bra018539.1-P	EnsemblPlantsGene:Bra018539	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF15	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002547324	UniProt:M4DPU8	MapMan:15.5.32	:	:

Description

AT4G02590 (E=1e-081) UNE12 | UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor

Coordinates

chrA05:+:9055955..9059307

Molecular Weight (calculated)

27474.0 Da

IEP (calculated)

8.508

GRAVY (calculated)

-0.483

Length

254 amino acids

Sequence
(BLAST)

001: MMLQVGSGEE GSGFHSQMFP LGLSLEQGKG PGVLRPEGGG GLGSGKQFSD DVLDHPSSSM KPVFPGQPMQ QPAPSAPPHQ PTSIRPRVRA RHGQATDPHS
101: IAERLRRERI AERIRALQEL VPTVNKTDRA AMIDEIVDYV KFLRLQVKVW SMSRLGGAGA VAPLVTDMPL PSSVEDEGSE GGRTPQAAWE KGSNDGTERQ
201: VAKLMEKNVW AAMQLLQSKT LCMMPISLAM AIYHSQPPDT SSSVVKPETN PPRP

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.