Factsheet for Bra010591.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012128.1-P
Bra028620.1-P
Bra030002.1-P
Bra036071.1-P
Bra036801.1-P
Bra037128.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	Bra030002.1-P	AT3G50330.1	17855426
AT4G36930.1	Bra036071.1-P	AT3G50330.1	17855426
AT4G36930.1	Bra028620.1-P	AT5G09750.1	17855426
AT4G36930.1	Bra012128.1-P	AT5G67060.1	17855426
AT4G36930.1	Bra036801.1-P	AT5G67060.1	17855426
AT4G36930.1	Bra037128.1-P	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44048	Canola	nucleus, plastid	100.0	100.0
Bra011740.1-P	Field mustard	nucleus, plastid	77.42	74.58
AT4G36930.1	Thale cress	nucleus	79.77	72.92
GSMUA_Achr9P11300_001	Banana	nucleus	12.9	69.84
TraesCS6A01G190600.1	Wheat	nucleus	18.77	49.61
Bra012133.1-P	Field mustard	nucleus, plastid	23.46	37.38
Solyc02g093280.2.1	Tomato	nucleus	39.59	35.71
PGSC0003DMT400010253	Potato	nucleus	39.3	35.64
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	20.23	35.03
OQU75890	Sorghum	nucleus	26.98	31.62
TraesCS7A01G126900.1	Wheat	nucleus	29.62	30.51
TraesCS7D01G124700.1	Wheat	nucleus	30.21	30.47
GSMUA_Achr10P...	Banana	plastid	30.5	30.32
GSMUA_Achr8P15670_001	Banana	nucleus	31.38	30.31
TraesCS7B01G026300.1	Wheat	nucleus	29.91	30.09
HORVU7Hr1G026560.2	Barley	nucleus	29.03	29.29
Os02t0805250-00	Rice	nucleus	23.17	28.21
KXG31309	Sorghum	nucleus	24.05	28.08
Zm00001d045212_P001	Maize	nucleus	27.86	28.02
HORVU6Hr1G088020.4	Barley	nucleus	23.46	27.03
TraesCS6D01G357700.1	Wheat	nucleus	23.17	26.6
TraesCS6A01G373500.2	Wheat	nucleus	23.17	26.07
TraesCS6B01G411300.1	Wheat	nucleus	22.29	25.08
Zm00001d018416_P001	Maize	mitochondrion	23.75	24.55
Bra037312.1-P	Field mustard	nucleus	14.96	24.4
Bra011237.1-P	Field mustard	plastid	14.66	23.15
Bra020398.1-P	Field mustard	nucleus	15.54	18.93
Bra003483.1-P	Field mustard	nucleus	17.01	18.89
Bra036256.1-P	Field mustard	nucleus	12.61	18.86
Bra000560.1-P	Field mustard	nucleus	21.41	18.81
Bra002679.1-P	Field mustard	nucleus	15.25	17.99
Bra037742.1-P	Field mustard	nucleus	20.82	17.49
Bra006788.1-P	Field mustard	nucleus	15.25	17.33
Bra000283.1-P	Field mustard	nucleus	19.94	16.46
Bra018539.1-P	Field mustard	nucleus	12.02	16.14
Bra007430.1-P	Field mustard	nucleus	19.65	15.73
Bra000436.1-P	Field mustard	nucleus	18.48	15.59
Bra004489.1-P	Field mustard	nucleus	18.18	15.5
Bra007863.1-P	Field mustard	nucleus	14.96	15.09
Bra032111.1-P	Field mustard	nucleus	14.96	14.66
Bra020017.1-P	Field mustard	nucleus	21.11	14.57
Bra000872.1-P	Field mustard	nucleus	13.2	14.56
GSMUA_Achr7P20810_001	Banana	nucleus	25.51	14.52
Bra031668.1-P	Field mustard	nucleus	20.82	14.43
Bra033368.1-P	Field mustard	nucleus	12.32	13.5
Bra007660.1-P	Field mustard	nucleus	13.2	10.66
Bra011061.1-P	Field mustard	nucleus	15.54	10.25
Bra011062.1-P	Field mustard	cytosol	13.49	10.04

Protein Annotations

EnsemblPlants:Bra010591.1	EnsemblPlants:Bra010591.1-P	EnsemblPlantsGene:Bra010591	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025461E4	UniProt:M4D291	MapMan:15.5.32	:

Description

AT4G36930 (E=4e-101) SPT | SPT (SPATULA); DNA binding / transcription factor

Coordinates

chrA08:-:15365727..15367382

Molecular Weight (calculated)

36836.0 Da

IEP (calculated)

7.179

GRAVY (calculated)

-0.540

Length

341 amino acids

Sequence
(BLAST)

001: MADKKLISSS SSSTTSIYDT RSSNNSNHHN PPSSSDEISL FLRHIFDRSS PLPSYYSPAT MTTVVHGDPH AENPRRFVSP QTSKVLVGSG VGSSSATACY
101: GFSRVGGGNN NIAQGNSSGT RVSSSAVGAS GNETDEYDCE SEEGVEVVFD DELLCKSRTS SKRCRAAEVH NLSEKKRRSR INEKMKALQS LIPNSNKTDK
201: ASMLDEAIEY LKQLQLQVQM LTMRNGVNLH PLCLPGTTLH PLQLSQLLPV VPPEATNDSL FNHTNHFAST SNAPAMINTD ALEPSIRSHF GPFPLLTSPA
301: EMSGEGVLTH SRLNVGHSNT NLTGRQAALN GQQPDLKDRL S

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.