Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G411300.1 | Wheat | nucleus | 92.59 | 90.76 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 90.57 | 88.78 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 87.21 | 87.5 |
| Os02t0805250-00 | Rice | nucleus | 55.22 | 58.57 |
| KXG31309 | Sorghum | nucleus | 56.57 | 57.53 |
| CDY37185 | Canola | mitochondrion | 17.85 | 54.08 |
| Zm00001d018416_P001 | Maize | mitochondrion | 53.87 | 48.48 |
| KRH04711 | Soybean | plastid | 16.5 | 30.62 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 16.16 | 30.57 |
| KRH04595 | Soybean | nucleus | 26.94 | 29.41 |
| KRH28453 | Soybean | nucleus | 26.94 | 27.49 |
| AT5G67110.1 | Thale cress | nucleus | 19.19 | 27.14 |
| CDY24734 | Canola | plastid | 12.79 | 26.76 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 30.3 | 26.63 |
| KRH05665 | Soybean | nucleus | 26.6 | 26.6 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 16.84 | 26.6 |
| KRH15381 | Soybean | nucleus | 26.26 | 26.26 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 18.86 | 26.17 |
| CDY01438 | Canola | nucleus, plastid | 18.86 | 25.69 |
| CDY12804 | Canola | nucleus, plastid | 18.52 | 25.46 |
| PGSC0003DMT400020534 | Potato | nucleus | 24.58 | 23.25 |
| CDY44048 | Canola | nucleus, plastid | 26.6 | 23.17 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 26.6 | 23.17 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 30.64 | 23.1 |
| CDY22448 | Canola | nucleus, plastid | 27.27 | 23.01 |
| CDX69281 | Canola | nucleus, plastid | 26.94 | 22.92 |
| Solyc04g078690.2.1 | Tomato | nucleus | 23.91 | 22.61 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 27.95 | 22.49 |
| KRH77016 | Soybean | nucleus | 28.28 | 22.4 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 26.6 | 22.32 |
| CDX75629 | Canola | nucleus | 25.93 | 22.25 |
| AT4G36930.1 | Thale cress | nucleus | 26.94 | 21.45 |
| Solyc02g093280.2.1 | Tomato | nucleus | 26.94 | 21.16 |
| PGSC0003DMT400010253 | Potato | nucleus | 26.6 | 21.01 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 38.38 | 19.03 |
| TraesCS5D01G060300.1 | Wheat | nucleus | 21.55 | 18.29 |
| TraesCS5D01G449200.1 | Wheat | nucleus | 14.48 | 15.3 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 21.55 | 14.88 |
| TraesCS6D01G341200.1 | Wheat | nucleus | 17.51 | 14.53 |
| TraesCS5D01G386500.1 | Wheat | nucleus | 24.92 | 14.34 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 19.53 | 13.88 |
| TraesCS7D01G149400.1 | Wheat | nucleus | 17.51 | 13.0 |
| TraesCS1D01G215600.2 | Wheat | nucleus | 19.53 | 12.75 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 19.19 | 11.35 |
| TraesCS5D01G233000.1 | Wheat | nucleus | 17.85 | 11.32 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 15.15 | 9.38 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G357700.1 | EnsemblPlantsGene:TraesCS6D01G357700 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF306 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:451109034..451111361
Molecular Weight (calculated)
33013.3 Da
IEP (calculated)
8.080
GRAVY (calculated)
-0.734
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDQEHLDFI MRHHHHQDGM GFVPADRGDS EEALGSSESE PAGRPRGKRA RAAEVHNLSE KRRRCKINEK MKALQSLVPN SSKTDKASML DDAIEYLKHL
101: QLQVQMLSMR NGMYRPSVNL PGAPDQLPTS QMCAALNRVD ASSNHPSSML PMNHFLGAMS GTRHLYGPPN QDRPRHEPLV LSSVPCTTTR EPPFLLGPSQ
201: GSPLRSLQLT LPAEMIFQEE AMLKHRLSST QETTSVPGHE MKQETPAARA GHFDACSIWK NQSQDMTPNN PESVLFAPHL RRFGNGNADS GLRAESK
101: QLQVQMLSMR NGMYRPSVNL PGAPDQLPTS QMCAALNRVD ASSNHPSSML PMNHFLGAMS GTRHLYGPPN QDRPRHEPLV LSSVPCTTTR EPPFLLGPSQ
201: GSPLRSLQLT LPAEMIFQEE AMLKHRLSST QETTSVPGHE MKQETPAARA GHFDACSIWK NQSQDMTPNN PESVLFAPHL RRFGNGNADS GLRAESK
001: MGDSDVGDRL PPPSSSDELS SFLRQILSRT PTAQPSSPPK STNVSSAETF FPSVSGGAVS SVGYGVSETG QDKYAFEHKR SGAKQRNSLK RNIDAQFHNL
101: SEKKRRSKIN EKMKALQKLI PNSNKTDKAS MLDEAIEYLK QLQLQVQTLA VMNGLGLNPM RLPQVPPPTH TRINETLEQD LNLETLLAAP HSLEPAKTSQ
201: GMCFSTATLL
101: SEKKRRSKIN EKMKALQKLI PNSNKTDKAS MLDEAIEYLK QLQLQVQTLA VMNGLGLNPM RLPQVPPPTH TRINETLEQD LNLETLLAAP HSLEPAKTSQ
201: GMCFSTATLL
Arabidopsis Description
ALCTranscription factor ALC [Source:UniProtKB/Swiss-Prot;Acc:Q9FHA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.