Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G212700.1 | Wheat | nucleus | 95.82 | 95.82 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 94.95 | 94.95 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 94.29 | 92.46 |
| Os10t0556200-01 | Rice | nucleus | 66.15 | 64.73 |
| Zm00001d029898_P001 | Maize | nucleus | 68.57 | 63.67 |
| OQU92150 | Sorghum | nucleus | 71.43 | 60.52 |
| CDY65390 | Canola | nucleus | 19.12 | 41.63 |
| Bra037312.1-P | Field mustard | nucleus | 19.12 | 41.63 |
| CDX83214 | Canola | nucleus | 30.55 | 39.94 |
| CDX91917 | Canola | nucleus | 30.11 | 39.48 |
| CDX74328 | Canola | nucleus | 33.19 | 39.02 |
| Bra000560.1-P | Field mustard | nucleus | 32.97 | 38.66 |
| AT4G00050.1 | Thale cress | nucleus | 33.85 | 38.6 |
| CDY21498 | Canola | nucleus | 32.75 | 38.5 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 38.24 | 37.42 |
| KRH75301 | Soybean | nucleus | 35.38 | 35.15 |
| KRG88937 | Soybean | nucleus | 35.82 | 35.05 |
| Solyc01g090790.2.1 | Tomato | nucleus | 35.6 | 34.91 |
| PGSC0003DMT400066807 | Potato | nucleus | 34.73 | 34.05 |
| Solyc10g018510.1.1 | Tomato | nucleus | 25.27 | 29.41 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 9.67 | 28.03 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 9.89 | 23.94 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 12.75 | 19.53 |
| TraesCS5D01G060300.1 | Wheat | nucleus | 14.73 | 19.14 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 14.07 | 18.93 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 17.14 | 18.66 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 15.16 | 16.05 |
| TraesCS5D01G386500.1 | Wheat | nucleus | 17.58 | 15.5 |
| TraesCS5D01G449200.1 | Wheat | nucleus | 9.45 | 15.3 |
| TraesCS6D01G341200.1 | Wheat | nucleus | 11.65 | 14.8 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 16.26 | 14.74 |
| TraesCS7D01G149400.1 | Wheat | nucleus | 12.31 | 14.0 |
| TraesCS5D01G233000.1 | Wheat | nucleus | 12.53 | 12.18 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 10.11 | 9.58 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009567 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF173 | SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:TraesCS1D01G215600 | EnsemblPlants:TraesCS1D01G215600.2 | InterPro:bHLH_dom |
| TIGR:cd00083 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:300862437..300870606
Molecular Weight (calculated)
48315.4 Da
IEP (calculated)
6.177
GRAVY (calculated)
-0.467
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNQCVPSWD LDETVGAGLN PTSTGSAQRM ASGDSGLTGP VAMPMPDQYD EVAELTWEKG NIFWQGLLNR SVPKYPAAPA PAQMHAIGGA GDHRETLEAV
101: VGEAAARLSS QSTSHLGQPL PTAAAPWLGV GAPADGLVPC ARVEDPAEGD VRRKRARVVG EDGRVCASQG SVAPGRGESS LLTLEPCGTG ADDLCGFTTT
201: NNSTSLDHGS PETENTSFGG GASDSRCFSR RSQRDGLCDE AENVVVKGEA PMRPSISTKR SRAAAIHNES ERKRRDRINQ KMQTLQKLVP NSSKTDKASM
301: LDEVIDHLKQ LQATVQMMNR MSSMMMPMAM PQLAQMSVMA NMAQMAQMAQ MGLGMMNMAG PLAQPAYTGL TQPMMHASTP FVAIQPWNAG AGADRQKQPA
401: AAAVPDGYSA FLACQAAQQN AQQQAQPNGM EAYSRMMAMC QKLSQQQTQP GSSKE
101: VGEAAARLSS QSTSHLGQPL PTAAAPWLGV GAPADGLVPC ARVEDPAEGD VRRKRARVVG EDGRVCASQG SVAPGRGESS LLTLEPCGTG ADDLCGFTTT
201: NNSTSLDHGS PETENTSFGG GASDSRCFSR RSQRDGLCDE AENVVVKGEA PMRPSISTKR SRAAAIHNES ERKRRDRINQ KMQTLQKLVP NSSKTDKASM
301: LDEVIDHLKQ LQATVQMMNR MSSMMMPMAM PQLAQMSVMA NMAQMAQMAQ MGLGMMNMAG PLAQPAYTGL TQPMMHASTP FVAIQPWNAG AGADRQKQPA
401: AAAVPDGYSA FLACQAAQQN AQQQAQPNGM EAYSRMMAMC QKLSQQQTQP GSSKE
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.