Factsheet for TraesCS6D01G341200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G391100.1	Wheat	nucleus	97.77	97.49
HORVU6Hr1G085500.3	Barley	nucleus	94.69	93.65
TraesCS6A01G358400.3	Wheat	nucleus	97.21	89.69
KRH72281	Soybean	nucleus, plastid	19.55	56.0
TraesCS7D01G149400.1	Wheat	nucleus	57.54	51.5
CDY20290	Canola	endoplasmic reticulum, extracellular	25.98	45.81
CDY46132	Canola	endoplasmic reticulum	22.35	45.45
TraesCS5D01G449200.1	Wheat	nucleus	33.24	42.35
OQU89497	Sorghum	nucleus	53.63	41.29
TraesCS5D01G233000.1	Wheat	nucleus	51.96	39.74
CDY46133	Canola	nucleus	17.88	33.51
TraesCS2D01G461900.1	Wheat	nucleus	11.45	26.11
TraesCS7D01G158300.1	Wheat	nucleus	34.08	25.42
TraesCS2D01G461700.3	Wheat	nucleus	12.29	23.4
TraesCS6D01G357700.1	Wheat	nucleus	14.53	17.51
TraesCS7D01G124700.1	Wheat	nucleus	15.92	16.86
TraesCS5D01G060300.1	Wheat	nucleus	15.08	15.43
TraesCS2D01G254400.3	Wheat	nucleus	15.64	13.02
TraesCS5D01G428400.2	Wheat	nucleus	14.8	12.68
TraesCS5D01G386500.1	Wheat	nucleus	17.04	11.82
TraesCS1D01G084200.1	Wheat	nucleus	16.48	11.75
TraesCS1D01G215600.2	Wheat	nucleus	14.8	11.65

Protein Annotations

EnsemblPlants:TraesCS6D01G341200.1	EnsemblPlantsGene:TraesCS6D01G341200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:440363619..440367041

Molecular Weight (calculated)

36666.0 Da

IEP (calculated)

5.640

GRAVY (calculated)

-0.458

Length

358 amino acids

Sequence
(BLAST)

001: MQPAGREMHG GGQGQGQDDF FEQMLSALPT AWAELGSVRP PWELQAAGAP PHDGDPGFDE SALLASRLRH NQISGGGGDD KPPPALLPRH GLDGGGFLPL
101: PLFTDRSRED LQGANQALFD GFGAAGMHAA GAAQPPFGQA GSMPPPAAQG GAAAPPRQRQ RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPSANKTD
201: KASMLDEIID YVKFLQLQVK VLSMSRLGGA AAVGPLVAGL SSESSGNGNG TSSSGDGNGD DDNGGSTLRA TEQQVARLME EDMGTAMQYL QGKGLCLMPI
301: SLASVISSAT SSSLRSATRP AGNAGGPLHE GGSPASPRLV NGGVGADGSR TIGDGGGQ

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.