Factsheet for TraesCS5D01G386500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G376500.1	Wheat	nucleus	90.5	95.89
TraesCS5B01G380200.1	Wheat	nucleus	82.56	95.3
HORVU5Hr1G093310.11	Barley	nucleus	87.6	82.63
OQU91282	Sorghum	nucleus	64.92	62.04
Zm00001d033267_P001	Maize	nucleus	63.95	60.22
TraesCS5D01G060300.1	Wheat	nucleus	31.01	45.71
TraesCS2D01G461900.1	Wheat	nucleus	9.88	32.48
GSMUA_Achr6P31370_001	Banana	nucleus	22.87	31.72
TraesCS2D01G461700.3	Wheat	nucleus	10.85	29.79
GSMUA_Achr6P30080_001	Banana	nucleus	22.29	28.68
TraesCS5D01G428400.2	Wheat	nucleus	22.29	27.51
GSMUA_Achr5P02280_001	Banana	nucleus	27.71	26.29
TraesCS6D01G357700.1	Wheat	nucleus	14.34	24.92
TraesCS2D01G254400.3	Wheat	nucleus	19.19	23.02
GSMUA_Achr4P31770_001	Banana	nucleus	25.97	22.6
TraesCS7D01G124700.1	Wheat	nucleus	14.15	21.6
TraesCS1D01G084200.1	Wheat	nucleus	20.74	21.31
TraesCS7D01G149400.1	Wheat	nucleus	14.15	18.25
TraesCS5D01G449200.1	Wheat	nucleus	9.88	18.15
TraesCS1D01G215600.2	Wheat	nucleus	15.5	17.58
TraesCS6D01G341200.1	Wheat	nucleus	11.82	17.04
TraesCS5D01G233000.1	Wheat	nucleus	12.6	13.89
TraesCS7D01G158300.1	Wheat	nucleus	10.85	11.67

Protein Annotations

EnsemblPlants:TraesCS5D01G386500.1	EnsemblPlantsGene:TraesCS5D01G386500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.1.4	:	:

Description

No Description!

Coordinates

chr5D:-:456341186..456343356

Molecular Weight (calculated)

55089.7 Da

IEP (calculated)

6.881

GRAVY (calculated)

-0.505

Length

516 amino acids

Sequence
(BLAST)

001: MSQFVPDWGN MGDISRPLGF ALDRFMHWNL WSNGIANLFV FVHGVCCCSE DDDLMELLWC NGNVVMQSQG HRKLPPRPEK VPAPPVVQED EAGLWFPFAL
101: ADSLDKDIFT DLFCEEPPGV DAGKAGRDGA PVLGDADRRS SQSSAVSAAS DLMPPPKSTH VSCSSRQQSM SLADCGDNAG GVLSDLVQAR AGKAAMEEGA
201: SSTLSAMGAS FCGSNQVQVQ GAVSEQGRAG HTTAYGGSGA GSALPSAVGS GNANARGRGY EATVASSSGR SNYSFGVTAT TATTGTEPTS TSNRSSKRKR
301: GLDTEDSESP SEDAESESLA LERKPPQKLT TARRSRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKTD KASMLDEAIE YLKTLQMQVQ MMWMGSGMAP
401: PAVMFPGMQM HQYLPQMGPP SMARMPFMAP PQQGHGVSLP EQYAHFLGVN PHHLQPPAHH HHHQHFAQGV GYYPLGAKAL QQSPALHHVS NGNTGGGTPA
501: ATANATPGNA IHPNKR

Best Arabidopsis Sequence Match ( AT2G20180.4 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.