Factsheet for TraesCS5A01G376500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G380200.1	Wheat	nucleus	86.65	94.41
TraesCS5D01G386500.1	Wheat	nucleus	95.89	90.5
HORVU5Hr1G093310.11	Barley	nucleus	93.02	82.82
OQU91282	Sorghum	nucleus	68.79	62.04
Zm00001d033267_P001	Maize	nucleus	67.97	60.4
TraesCS5A01G049600.1	Wheat	nucleus	33.88	49.11
TraesCS6A01G190600.1	Wheat	nucleus	10.68	40.31
GSMUA_Achr6P31370_001	Banana	nucleus	24.23	31.72
TraesCS2A01G461700.2	Wheat	nucleus	11.5	29.79
GSMUA_Achr6P30080_001	Banana	nucleus	23.2	28.18
TraesCS2A01G253900.2	Wheat	nucleus	19.92	27.09
TraesCS5A01G420200.1	Wheat	nucleus	23.0	26.67
GSMUA_Achr5P02280_001	Banana	nucleus	28.95	25.92
TraesCS6A01G373500.2	Wheat	nucleus	15.2	24.42
GSMUA_Achr4P31770_001	Banana	nucleus	27.1	22.26
TraesCS1A01G083000.1	Wheat	nucleus	22.38	21.5
TraesCS7A01G126900.1	Wheat	nucleus	14.37	21.15
TraesCS5A01G441900.1	Wheat	nucleus	10.47	18.15
TraesCS7A01G147500.1	Wheat	nucleus	14.58	17.84
TraesCS1A01G212700.1	Wheat	nucleus	16.43	17.58
TraesCS6A01G358400.3	Wheat	nucleus	12.32	15.46
TraesCS5A01G225700.1	Wheat	nucleus	13.76	14.63
TraesCS7A01G157700.1	Wheat	nucleus	11.29	11.46

Protein Annotations

EnsemblPlants:TraesCS5A01G376500.1	EnsemblPlantsGene:TraesCS5A01G376500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.1.4	:	:	:

Description

No Description!

Coordinates

chr5A:-:574194825..574199820

Molecular Weight (calculated)

51688.7 Da

IEP (calculated)

6.888

GRAVY (calculated)

-0.585

Length

487 amino acids

Sequence
(BLAST)

001: MSQFVPDWGN MGDISRPLGE DDDLMELLWC NGNVVMQSQG HRKLPPRPEK VPAPPVVQED DAGLWFPFAL ADSLDKDIFQ DLFCEEPPGA AGVDGAGKIG
101: RDGVPVLGDD RRSSQSSAVS AASDLMPPPK STHVSCSSRQ QSMSLADCGD NAGGVLSDLV QARAGKAAME EGASSTLSAM GASFCGSNQV QVQGAVSEQG
201: RAGHTTAYGG GGAGSALPSA VGSGNANARG RGHEATVASS SGRSNYSFGV TTTTGTEPTS TSHRSSKRKR GLDTEDSESP SEDAESESLA LERKPPQKLT
301: TARRSRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKTD KASMLDEAIE YLKTLQMQVQ MMWMGGGMAP PAVMFPGMQM HQYLPQMGPP SMARMPFMAP
401: PQQGHGVSLP EQYAHFLGVN PHHLQPPSHH PHHHQHFAQG VGYYPLGAKA LQQSPALHHV PNGNTGAGAP AATANTAPGN AIHPNKR

Best Arabidopsis Sequence Match ( AT2G20180.4 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.