Factsheet for TraesCS6A01G190600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G237500.1
TraesCS5B01G235200.1
TraesCS5D01G244000.1
TraesCS6A01G142000.1
TraesCS7A01G262600.1
TraesCS7A01G323000.1
TraesCS7B01G160500.1
TraesCS7B01G223900.1
TraesCS7D01G263400.1
TraesCS7D01G319600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	TraesCS5A01G237500.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS5B01G235200.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS5D01G244000.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS6A01G142000.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7A01G262600.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7B01G160500.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7D01G263400.1	AT3G50330.1	17855426
AT4G36930.1	TraesCS7A01G323000.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS7B01G223900.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS7D01G319600.1	AT5G09750.1	17855426
AT4G36930.1	TraesCS5A01G237500.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS5B01G235200.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS5D01G244000.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS6A01G142000.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7A01G262600.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7B01G160500.1	AT5G67060.1	17855426
AT4G36930.1	TraesCS7D01G263400.1	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37185	Canola	mitochondrion	37.98	50.0
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	56.59	37.06
KRH04711	Soybean	plastid	40.31	32.5
CDY24734	Canola	plastid	31.01	28.17
AT5G67110.1	Thale cress	nucleus	42.64	26.19
OQU75890	Sorghum	nucleus	58.91	26.12
TraesCS7A01G126900.1	Wheat	nucleus	66.67	25.98
TraesCS7D01G124700.1	Wheat	nucleus	66.67	25.44
HORVU7Hr1G026560.2	Barley	nucleus	66.67	25.44
TraesCS7B01G026300.1	Wheat	nucleus	66.67	25.37
Bra012133.1-P	Field mustard	nucleus, plastid	41.86	25.23
CDY01438	Canola	nucleus, plastid	41.86	24.77
CDY12804	Canola	nucleus, plastid	41.09	24.54
KRH04595	Soybean	nucleus	47.29	22.43
Zm00001d045212_P001	Maize	nucleus	58.14	22.12
TraesCS2A01G461700.2	Wheat	nucleus	31.01	21.28
KRH05665	Soybean	nucleus	48.06	20.88
KRH28453	Soybean	nucleus	46.51	20.62
KRH15381	Soybean	nucleus	46.51	20.2
Solyc04g078690.2.1	Tomato	nucleus	47.29	19.43
PGSC0003DMT400020534	Potato	nucleus	47.29	19.43
CDX75629	Canola	nucleus	50.39	18.79
CDY44048	Canola	nucleus, plastid	49.61	18.77
Bra010591.1-P	Field mustard	nucleus, plastid	49.61	18.77
CDX69281	Canola	nucleus, plastid	50.39	18.62
CDY22448	Canola	nucleus, plastid	50.39	18.47
Bra011740.1-P	Field mustard	nucleus, plastid	50.39	18.36
TraesCS6A01G373500.2	Wheat	nucleus	41.86	17.82
PGSC0003DMT400010253	Potato	nucleus	51.94	17.82
Solyc02g093280.2.1	Tomato	nucleus	51.94	17.72
AT4G36930.1	Thale cress	nucleus	51.16	17.69
KRH77016	Soybean	nucleus	50.39	17.33
VIT_18s0001g10270.t01	Wine grape	nucleus	48.84	17.07
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	49.61	16.24
TraesCS5A01G049600.1	Wheat	nucleus	37.98	14.58
TraesCS2A01G253900.2	Wheat	nucleus	34.88	12.57
TraesCS5A01G441900.1	Wheat	nucleus	27.13	12.46
TraesCS5A01G420200.1	Wheat	nucleus	34.88	10.71
TraesCS5A01G376500.1	Wheat	nucleus	40.31	10.68
GSMUA_Achr7P20810_001	Banana	nucleus	45.74	9.85
TraesCS6A01G358400.3	Wheat	nucleus	29.46	9.79
TraesCS1A01G212700.1	Wheat	nucleus	34.11	9.67
TraesCS1A01G083000.1	Wheat	nucleus	37.98	9.66
TraesCS7A01G147500.1	Wheat	nucleus	29.46	9.55
TraesCS5A01G225700.1	Wheat	nucleus	30.23	8.52
TraesCS7A01G157700.1	Wheat	nucleus	26.36	7.08

Protein Annotations

EnsemblPlants:TraesCS6A01G190600.1	EnsemblPlantsGene:TraesCS6A01G190600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF297	PFAM:PF00010	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083
MapMan:15.5.32	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:254936294..254937809

Molecular Weight (calculated)

14514.3 Da

IEP (calculated)

8.994

GRAVY (calculated)

-0.801

Length

129 amino acids

Sequence
(BLAST)

001: MSRFRRHLEG ATGFYKSEMG GSSEPESHGT SDCPRGGGGS SSKCTRAAEV HNLSERRRRS RINEKMKALQ ILIPNSNKTD KASMLDEAIL IEYLKQLRLQ
101: VHDNEMLKRQ SESMTLQCSC TVPLNITQE

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.