Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G323000.1 | Wheat | nucleus | 96.88 | 99.36 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 97.51 | 98.74 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 85.36 | 80.83 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 28.97 | 76.23 |
| Zm00001d049721_P001 | Maize | nucleus | 65.11 | 72.82 |
| Os08t0108500-01 | Rice | nucleus | 68.54 | 71.9 |
| Zm00001d035027_P001 | Maize | nucleus | 73.52 | 70.45 |
| EES14382 | Sorghum | nucleus | 73.52 | 67.82 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 39.25 | 63.64 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 32.71 | 62.5 |
| GSMUA_Achr11P... | Banana | nucleus | 36.45 | 61.26 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 37.69 | 54.26 |
| Bra028620.1-P | Field mustard | nucleus | 35.2 | 52.8 |
| CDX85799 | Canola | nucleus | 35.2 | 52.8 |
| CDY64847 | Canola | nucleus | 35.2 | 52.56 |
| AT5G09750.1 | Thale cress | nucleus | 34.58 | 49.55 |
| CDY21597 | Canola | nucleus | 33.96 | 48.88 |
| KRH59559 | Soybean | nucleus | 37.69 | 45.49 |
| KRH43543 | Soybean | nucleus | 38.32 | 45.39 |
| CDX91916 | Canola | cytosol | 24.92 | 44.94 |
| KRH53884 | Soybean | nucleus | 32.09 | 44.02 |
| KRH64060 | Soybean | nucleus | 32.71 | 43.21 |
| AT4G00120.1 | Thale cress | nucleus | 26.48 | 42.93 |
| CDX74329 | Canola | cytosol | 24.3 | 42.86 |
| Bra000979.1-P | Field mustard | cytosol | 24.3 | 42.16 |
| PGSC0003DMT400073760 | Potato | nucleus | 32.4 | 39.69 |
| TraesCS7B01G160500.1 | Wheat | nucleus | 25.55 | 37.1 |
| Solyc11g005780.1.1 | Tomato | nucleus | 32.09 | 36.4 |
| TraesCS5B01G235200.1 | Wheat | nucleus | 24.3 | 33.19 |
| TraesCS7B01G074900.1 | Wheat | nucleus | 18.38 | 32.07 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 16.2 | 24.53 |
| TraesCS1B01G359000.1 | Wheat | nucleus | 10.59 | 18.28 |
| TraesCS3B01G281600.1 | Wheat | nucleus | 20.87 | 17.63 |
| TraesCS1B01G380000.1 | Wheat | nucleus | 21.18 | 17.09 |
| TraesCS3B01G474700.1 | Wheat | nucleus | 13.08 | 16.54 |
| TraesCS5B01G406100.1 | Wheat | nucleus | 13.4 | 15.64 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 21.5 | 14.71 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 12.46 | 14.6 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 12.46 | 14.6 |
| TraesCS5B01G074500.1 | Wheat | nucleus | 12.77 | 14.14 |
| TraesCS4B01G080700.1 | Wheat | nucleus | 13.4 | 13.78 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 11.53 | 13.03 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 11.84 | 13.01 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 11.53 | 12.94 |
| TraesCS2B01G212700.1 | Wheat | nucleus | 12.15 | 12.91 |
| TraesCS4B01G257200.1 | Wheat | nucleus | 13.08 | 12.69 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G223900.1 | EnsemblPlantsGene:TraesCS7B01G223900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF294 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:423549407..423550372
Molecular Weight (calculated)
35344.4 Da
IEP (calculated)
7.069
GRAVY (calculated)
-0.858
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNMTHNSSS SSSWDLDMSL GSHHHPLLFD HPTPTGPTPP APPPPPLSFH LHPPPPPPPH QHHQHHQQHQ LAIDPSPSSS LFPPPPHHHP HHLHHLDLAV
101: DPHRHHHDYQ RDQHPDEMQQ RPPPAMEEGS QQLHHQDAVD EAEEELGAMK EMMYRIAAMQ PVDIDPATIK KPRRRNVRIS EDPQSVAARH RRERISERIR
201: ILQRLVPGGT KMDTASMLDE AIRYIKFLKR QVQDLQHQPA PPQQQHYPGG GGTGGAGPSS TAAVAGRPAF LPLSAGSLID WAGLTRQVDI HGPTSSSSSS
301: SMGGALGFGF STGGQSSHGM H
101: DPHRHHHDYQ RDQHPDEMQQ RPPPAMEEGS QQLHHQDAVD EAEEELGAMK EMMYRIAAMQ PVDIDPATIK KPRRRNVRIS EDPQSVAARH RRERISERIR
201: ILQRLVPGGT KMDTASMLDE AIRYIKFLKR QVQDLQHQPA PPQQQHYPGG GGTGGAGPSS TAAVAGRPAF LPLSAGSLID WAGLTRQVDI HGPTSSSSSS
301: SMGGALGFGF STGGQSSHGM H
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.