Factsheet for GSMUA_Achr5P01290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P10450_001
GSMUA_Achr5P14210_001
GSMUA_Achr6P03790_001
GSMUA_Achr7P08700_001
GSMUA_Achr7P20810_001
GSMUA_Achr8P15670_001
GSMUA_Achr9P11300_001
GSMUA_Achr9P13880_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00120.1	GSMUA_Achr5P14210_001	AT2G38270.1	21798944
AT4G00120.1	GSMUA_Achr1P10450_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_Achr6P03790_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_Achr7P08700_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_Achr9P13880_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_AchrUn_...	AT3G21150.1	21798944
AT5G09750.1	GSMUA_Achr10P...	AT4G36930.1	17855426
AT5G09750.1	GSMUA_Achr7P20810_001	AT4G36930.1	17855426
AT5G09750.1	GSMUA_Achr8P15670_001	AT4G36930.1	17855426
AT5G09750.1	GSMUA_Achr9P11300_001	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18580_001	Banana	cytosol	47.47	77.05
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	52.53	61.9
GSMUA_Achr11P...	Banana	nucleus	53.54	55.5
CDY64847	Canola	nucleus	54.04	49.77
Bra028620.1-P	Field mustard	nucleus	53.54	49.53
CDX85799	Canola	nucleus	53.54	49.53
AT5G09750.1	Thale cress	nucleus	54.04	47.77
GSMUA_Achr8P23350_001	Banana	nucleus	36.36	46.45
CDY21597	Canola	nucleus	50.0	44.39
CDX91916	Canola	cytosol	38.89	43.26
GSMUA_Achr9P29130_001	Banana	nucleus	33.33	43.14
AT4G00120.1	Thale cress	nucleus	42.42	42.42
CDX74329	Canola	cytosol	38.89	42.31
Os08t0108500-01	Rice	nucleus	65.15	42.16
VIT_04s0044g01040.t01	Wine grape	nucleus	47.47	42.15
Zm00001d049721_P001	Maize	nucleus	60.61	41.81
Bra000979.1-P	Field mustard	cytosol	38.89	41.62
KRH59559	Soybean	nucleus	54.55	40.6
KRH53884	Soybean	nucleus	47.98	40.6
KRH64060	Soybean	nucleus	49.49	40.33
TraesCS7A01G323000.1	Wheat	nucleus	63.64	40.26
KRH43543	Soybean	nucleus	54.55	39.85
TraesCS7D01G319600.1	Wheat	nucleus	63.13	39.43
TraesCS7B01G223900.1	Wheat	nucleus	63.64	39.25
Zm00001d035027_P001	Maize	nucleus	65.15	38.51
PGSC0003DMT400073760	Potato	nucleus	48.99	37.02
EES14382	Sorghum	nucleus	64.65	36.78
GSMUA_Achr1P14400_001	Banana	nucleus	29.29	34.73
Solyc11g005780.1.1	Tomato	nucleus	48.99	34.28
HORVU7Hr1G077270.3	Barley	cytosol	56.06	32.74
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	19.7	32.23
GSMUA_Achr10P...	Banana	nucleus	38.38	31.41
GSMUA_Achr6P16890_001	Banana	nucleus	21.21	30.88
GSMUA_Achr9P15380_001	Banana	nucleus	37.88	30.61
GSMUA_Achr4P23240_001	Banana	nucleus	19.7	26.71
GSMUA_AchrUn_...	Banana	nucleus	31.82	23.08
GSMUA_Achr4P18820_001	Banana	nucleus	23.74	22.93
GSMUA_Achr3P25950_001	Banana	nucleus	38.38	21.59
GSMUA_Achr8P24970_001	Banana	nucleus	34.85	19.83
GSMUA_AchrUn_...	Banana	nucleus	23.74	15.72
GSMUA_Achr9P09600_001	Banana	nucleus	20.71	14.86
GSMUA_Achr6P07760_001	Banana	nucleus	21.21	14.63
GSMUA_Achr3P18870_001	Banana	nucleus	25.25	14.45
GSMUA_Achr10P...	Banana	nucleus	21.21	14.09
GSMUA_Achr2P17130_001	Banana	nucleus	22.22	13.92
GSMUA_Achr2P22860_001	Banana	nucleus	21.21	13.04
GSMUA_Achr6P09370_001	Banana	nucleus	20.71	12.09

Protein Annotations

EnsemblPlants:GSMUA_Achr5P01290_001	EnsemblPlants:GSMUA_Achr5T01290_001	EnsemblPlantsGene:GSMUA_Achr5G01290_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF125	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002948ED7	UniProt:M0SUQ8	MapMan:15.5.32	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_44.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G01290_001]

Coordinates

chr5:-:742999..743595

Molecular Weight (calculated)

21803.8 Da

IEP (calculated)

6.247

GRAVY (calculated)

-0.564

Length

198 amino acids

Sequence
(BLAST)

001: MDNTSNNSSS SWDLEMSMGN QFLSDHIPSE LFQPTDPFLA HVHSPTFPGT HMSAQREVEG EEAEEEALGA MKEMMYRMAA MQPVDIDPST IKKPRRRNVR
101: ISDDPQSVAA RHRRERISER IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQVQELQPT PAQPQAAAPA AAAASSSSSS SSAMAAPPAL GFGLEPMH

Best Arabidopsis Sequence Match ( AT5G09750.1 )
(BLAST)

001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI

Arabidopsis Description

HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.