Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P03790_001 | Banana | nucleus | 41.5 | 27.23 |
| GSMUA_Achr8P07440_001 | Banana | nucleus | 32.65 | 25.67 |
| GSMUA_Achr1P10450_001 | Banana | cytosol | 36.73 | 22.59 |
| GSMUA_Achr7P08700_001 | Banana | cytosol | 36.05 | 21.63 |
| GSMUA_Achr3P22980_001 | Banana | cytosol, nucleus, plastid | 29.93 | 21.15 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus, plastid | 39.46 | 19.66 |
| GSMUA_Achr11P... | Banana | nucleus | 27.89 | 18.47 |
| CDY32408 | Canola | cytosol | 26.53 | 17.73 |
| Bra001815.1-P | Field mustard | cytosol | 27.21 | 17.39 |
| CDX82214 | Canola | cytosol | 27.21 | 17.39 |
| AT3G21150.1 | Thale cress | cytosol | 26.53 | 17.33 |
| CDY50075 | Canola | nucleus | 25.85 | 17.04 |
| KRH44613 | Soybean | nucleus | 27.89 | 17.01 |
| VIT_09s0054g00530.t01 | Wine grape | cytosol, nucleus, plastid | 29.93 | 16.92 |
| CDY19582 | Canola | cytosol | 25.17 | 16.74 |
| Bra031255.1-P | Field mustard | cytosol | 25.17 | 16.74 |
| Solyc06g063280.1.1 | Tomato | nucleus | 27.89 | 15.71 |
| KRH47291 | Soybean | nucleus | 25.17 | 15.23 |
| PGSC0003DMT400068177 | Potato | nucleus | 26.53 | 14.89 |
| GSMUA_Achr5P26340_001 | Banana | nucleus | 34.01 | 13.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P13880_001 | EnsemblPlants:GSMUA_Achr9T13880_001 | EnsemblPlantsGene:GSMUA_Achr9G13880_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF22 | SEG:seg | SMART:SM00336 | UniParc:UPI000296956F | UniProt:M0U046 | MapMan:35.2 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G13880_001]
Coordinates
chr9:-:8996952..8997395
Molecular Weight (calculated)
15074.6 Da
IEP (calculated)
7.176
GRAVY (calculated)
-0.244
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPAFTGSMA STAVEAKPGA ACELCGGGAA VHCEADAASL CWACDASVHG ANFLVARHLR RIVCACCQSL DDDRVISGAS SPSVRSICRS CGPDAPELSS
101: SASSPQESCV STADSKAGQE EEMEGAATSR VEGRGGRGRA RRRRSRP
101: SASSPQESCV STADSKAGQE EEMEGAATSR VEGRGGRGRA RRRRSRP
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
Arabidopsis Description
BBX29 [Source:UniProtKB/TrEMBL;Acc:A0A178UJV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.