Factsheet for GSMUA_Achr7P18710_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P06040_001
GSMUA_Achr3P10380_001
GSMUA_Achr5P23980_001
GSMUA_Achr9P18270_001
GSMUA_Achr9P28200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	GSMUA_Achr3P06040_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr3P10380_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr5P23980_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr9P18270_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr9P28200_001	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	74.93	74.35
CDY04231	Canola	mitochondrion	7.65	65.91
GSMUA_Achr4P30670_001	Banana	nucleus	48.02	49.59
KRH13468	Soybean	cytosol	12.66	48.48
GSMUA_Achr7P12560_001	Banana	nucleus	41.16	46.85
GSMUA_Achr10P...	Banana	nucleus	41.42	44.73
CDY67920	Canola	nucleus	39.05	42.53
CDY65591	Canola	nucleus	39.05	42.53
VIT_01s0011g03520.t01	Wine grape	nucleus	48.28	42.36
CDY03851	Canola	nucleus	41.16	41.94
KRH35955	Soybean	nucleus	45.65	41.29
KRG90815	Soybean	nucleus	45.12	40.91
Solyc05g009310.2.1	Tomato	nucleus	45.91	39.82
PGSC0003DMT400037755	Potato	nucleus	46.17	39.15
CDY53119	Canola	nucleus	38.79	39.1
CDY24402	Canola	nucleus	37.99	39.02
CDY44890	Canola	nucleus	41.16	38.9
CDY51133	Canola	nucleus	38.52	38.73
CDX81527	Canola	nucleus	40.9	38.65
Bra024750.1-P	Field mustard	nucleus	42.22	38.65
Solyc04g007210.2.1	Tomato	nucleus	43.54	38.55
Bra012475.1-P	Field mustard	nucleus	41.42	38.48
Bra033925.1-P	Field mustard	nucleus	40.63	38.4
AT1G25440.1	Thale cress	nucleus	41.95	38.13
AT1G68520.1	Thale cress	nucleus	40.63	37.93
CDY04230	Canola	nucleus	22.69	37.39
CDX77359	Canola	nucleus	15.57	36.88
CDY36106	Canola	nucleus	32.45	32.03
Bra004035.1-P	Field mustard	nucleus	39.58	31.65
Bra010994.1-P	Field mustard	nucleus	33.51	31.2
GSMUA_Achr11P...	Banana	nucleus	13.72	27.51
PGSC0003DMT400020030	Potato	nucleus	39.31	26.47
GSMUA_Achr10P...	Banana	nucleus	17.41	22.92
GSMUA_Achr6P01780_001	Banana	nucleus	19.0	17.56
GSMUA_Achr7P19660_001	Banana	mitochondrion	20.05	17.16
GSMUA_Achr10P...	Banana	nucleus	11.35	13.35

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr7G18710_001	EnsemblPlants:GSMUA_Achr7P18710_001
EnsemblPlants:GSMUA_Achr7T18710_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0TIQ8	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF21	SMART:SM00336	UniParc:UPI000295B801
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 16 [Source:GMGC_GENE;Acc:GSMUA_Achr7G18710_001]

Coordinates

chr7:+:21561142..21562681

Molecular Weight (calculated)

41501.4 Da

IEP (calculated)

7.200

GRAVY (calculated)

-0.640

Length

379 amino acids

Sequence
(BLAST)

001: MSLFEKQRPA AVAASSAVAG KTARACDGCG RRRARWYCAA DDAFLCQNCD SSVHSANPLA RRHNRIRLKT ATSSGAPDVD SDDSAPSWLR GFKRKARTPR
101: PHQHAKTASE ARTAHPTTVP ELVETSLDET EDEEQQLIYC VPVFDPAFAE FRSPPPLDDS NAPSGNEAKP TMDLQECTPA STPTINTANR LTAFLPSDME
201: IAEFAANMES LLGGGLDVSD GSFSMEKLGL VNSIEDGVNY CLGDAGRLKT EQPDDTQQVT QKARLSLDYE AVIIAWSSHG SSPWTDGERP QINLDSCWHD
301: CTGMWVEGAD ALGVGHGSDT GGGYADVGRQ ARVTRYREKR RTRLFAKKIR YEVRKLNAEK RPRMKGRFVK RAPGPAFAH

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.