Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra033925.1-P Field mustard nucleus 97.76 97.76
CDY44890 Canola nucleus 97.26 97.26
CDY07382 Canola nucleus 9.23 84.09
CDY07383 Canola cytosol 47.38 82.61
CDY04231 Canola mitochondrion 8.98 81.82
CDY04230 Canola nucleus 44.39 77.39
AT1G68520.1 Thale cress nucleus 76.81 75.86
CDY67920 Canola nucleus 53.37 61.49
CDY65591 Canola nucleus 53.37 61.49
CDY03851 Canola nucleus 55.36 59.68
CDY51133 Canola nucleus 55.86 59.42
CDY53119 Canola nucleus 54.86 58.51
KRH13468 Soybean cytosol 13.22 53.54
CDX77359 Canola nucleus 20.7 51.88
CDY24402 Canola nucleus 42.14 45.8
VIT_01s0011g03520.t01 Wine grape nucleus 46.88 43.52
KRH35955 Soybean nucleus 44.89 42.96
KRG90815 Soybean nucleus 44.39 42.58
GSMUA_Achr10P... Banana nucleus 40.15 42.15
GSMUA_Achr4P30670_001 Banana nucleus 38.15 41.69
GSMUA_Achr7P18710_001 Banana plastid 38.65 40.9
Solyc04g007210.2.1 Tomato nucleus 43.39 40.65
GSMUA_Achr10P... Banana nucleus 35.16 40.17
GSMUA_Achr7P12560_001 Banana nucleus 33.17 39.94
Solyc05g009310.2.1 Tomato nucleus 41.9 38.44
CDY36106 Canola nucleus 36.41 38.02
TraesCS7D01G209000.1 Wheat nucleus 40.9 37.96
TraesCS7A01G206200.1 Wheat nucleus 40.65 37.73
TraesCS7B01G113400.1 Wheat nucleus 40.15 37.27
PGSC0003DMT400037755 Potato nucleus 41.15 36.91
Zm00001d037327_P001 Maize mitochondrion, nucleus 41.4 36.73
Zm00001d045661_P001 Maize nucleus 40.9 35.96
HORVU4Hr1G007420.1 Barley nucleus, plastid 35.91 35.12
TraesCS6D01G274100.1 Wheat nucleus 37.91 35.02
TraesCS6A01G293200.1 Wheat nucleus 37.16 34.98
Os02t0731700-02 Rice nucleus 39.4 34.96
TraesCS4A01G268500.1 Wheat nucleus, plastid 35.66 34.88
TraesCS4D01G046200.1 Wheat nucleus, plastid 35.66 34.88
TraesCS6B01G323400.1 Wheat nucleus 37.16 34.81
EER88191 Sorghum nucleus, plastid 41.15 34.81
TraesCS4B01G045700.1 Wheat nucleus, plastid 35.41 34.55
Os03t0711100-01 Rice plastid 35.41 33.73
Os06t0264200-00 Rice plastid 40.4 33.68
Zm00001d013443_P001 Maize plastid 34.16 33.17
Zm00001d017939_P001 Maize nucleus 37.91 32.69
EER93585 Sorghum plastid 34.16 32.62
EES05581 Sorghum nucleus, plastid 39.4 32.38
CDX70561 Canola nucleus 11.72 31.13
HORVU6Hr1G073170.1 Barley nucleus 37.41 30.12
CDY66242 Canola nucleus 23.44 29.94
Zm00001d033719_P001 Maize plastid 34.41 29.3
CDY15597 Canola nucleus 14.21 29.08
CDY66177 Canola nucleus 14.21 28.93
PGSC0003DMT400020030 Potato nucleus 39.9 28.42
CDY06672 Canola nucleus 13.72 27.23
CDY10244 Canola nucleus 13.72 27.23
CDY42769 Canola nucleus 12.47 21.46
CDY09849 Canola nucleus 17.46 21.15
CDX85600 Canola nucleus 16.71 21.07
CDX78575 Canola nucleus 15.71 20.93
CDX69586 Canola nucleus, plastid 17.21 20.91
CDX91067 Canola nucleus 16.46 20.43
CDY38274 Canola nucleus, plastid 19.2 19.4
CDY52734 Canola nucleus, plastid 18.7 18.84
CDY42238 Canola nucleus 17.96 18.65
CDY47926 Canola nucleus 18.2 18.62
CDX89377 Canola plastid 17.46 18.32
CDX94392 Canola plastid 17.21 17.97
CDX92740 Canola plastid 16.71 16.88
Protein Annotations
MapMan:15.5.1.2GO:A0A078CXP0InterPro:CCT_domainEnsemblPlants:CDX81527ProteinID:CDX81527ProteinID:CDX81527.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0008270EnsemblPlantsGene:GSBRNA2T00135191001InterPro:IPR000315InterPro:IPR010402PFAM:PF00643PFAM:PF06203
PFscan:PS50119PFscan:PS51017PANTHER:PTHR31874PANTHER:PTHR31874:SF21SMART:SM00336UniParc:UPI0004EBEED7
InterPro:Znf_B-boxSEG:seg::::
Description
BnaC02g18310D
Coordinates
chrLK031825:-:980023..981751
Molecular Weight (calculated)
45516.8 Da
IEP (calculated)
5.203
GRAVY (calculated)
-0.685
Length
401 amino acids
Sequence
(BLAST)
001: MMKNLANVVG GKTARACDSC LKRRARWFCA ADDAFLCHSC DGSVHSANPL ARRHERVLLK SASPGKQRHD SSSPPHPPTW HQGFTRKART PRGGKKSHTM
101: IFHDLVPEMS SEDQSFEVEE QLIFEVPVLN PMCHEKCLNE SVESKIELPL MSMCFKGSDE EDDNAESCLN GLFPTDTELA QFSADVEILL GGGTDREYNM
201: EELGLGEMLK VEKEEVEEEE ELATIEVCDL DVADEITPFV ISFEYEYSQK TNLEEEDEKQ DVENNMIDVG VNEMSCSIKE EKNEKVHMLR LDYESVISTW
301: GGQGTPWTAR EPPQIDLNML CCPTDSMVES GGEAHHHNYV RGLGLHMGEA GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRSSIAAA
401: H
Best Arabidopsis Sequence Match ( AT1G68520.1 )
(BLAST)
001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
Arabidopsis Description
COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.