Factsheet for Os02t0731700-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0741700-01
Os06t0236300-01
Os08t0420700-01
Os09t0381600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	Os02t0741700-01	AT1G60010.1	21798944
AT1G68520.1	Os06t0236300-01	AT1G60010.1	21798944
AT1G68520.1	Os08t0420700-01	AT1G60010.1	21798944
AT1G68520.1	Os09t0381600-01	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G323400.1	Wheat	nucleus	65.49	69.16
TraesCS6D01G274100.1	Wheat	nucleus	66.37	69.12
TraesCS6A01G293200.1	Wheat	nucleus	63.94	67.84
CDY04231	Canola	mitochondrion	6.42	65.91
Zm00001d017939_P001	Maize	nucleus	66.37	64.52
EES05581	Sorghum	nucleus, plastid	67.92	62.91
HORVU6Hr1G073170.1	Barley	nucleus	66.15	60.04
Os06t0264200-00	Rice	plastid	58.63	55.09
KRH13468	Soybean	cytosol	11.28	51.52
GSMUA_Achr4P30670_001	Banana	nucleus	40.49	49.86
GSMUA_Achr10P...	Banana	nucleus	34.29	44.16
CDY03851	Canola	nucleus	34.96	42.47
VIT_01s0011g03520.t01	Wine grape	nucleus	40.49	42.36
CDY65591	Canola	nucleus	32.52	42.24
KRH35955	Soybean	nucleus	38.94	42.0
CDY67920	Canola	nucleus	32.3	41.95
KRG90815	Soybean	nucleus	38.05	41.15
CDX77359	Canola	nucleus	14.16	40.0
CDY53119	Canola	nucleus	33.19	39.89
Solyc04g007210.2.1	Tomato	nucleus	37.61	39.72
AT1G25440.1	Thale cress	nucleus	36.5	39.57
CDY51133	Canola	nucleus	32.96	39.52
CDY44890	Canola	nucleus	34.96	39.4
CDX81527	Canola	nucleus	34.96	39.4
Bra033925.1-P	Field mustard	nucleus	34.96	39.4
Bra012475.1-P	Field mustard	nucleus	35.4	39.22
Bra024750.1-P	Field mustard	nucleus	35.62	38.89
CDY24402	Canola	nucleus	31.64	38.75
Os03t0711100-01	Rice	plastid	35.84	38.48
Solyc05g009310.2.1	Tomato	nucleus	36.73	37.99
AT1G68520.1	Thale cress	nucleus	34.07	37.93
PGSC0003DMT400037755	Potato	nucleus	36.73	37.14
CDY04230	Canola	nucleus	18.58	36.52
CDY36106	Canola	nucleus	27.43	32.29
Bra010994.1-P	Field mustard	nucleus	28.54	31.7
Bra004035.1-P	Field mustard	nucleus	33.19	31.65
PGSC0003DMT400020030	Potato	nucleus	33.63	27.0
Os08t0119700-00	Rice	plastid	15.71	20.06
Os02t0148000-01	Rice	plastid	18.14	17.41
Os06t0699600-01	Rice	plastid	16.59	16.09

Protein Annotations

MapMan:15.5.1.2	EntrezGene:4330626	ProteinID:BAD15937.1	ProteinID:BAD16130.1	ProteinID:BAS80760.1	InterPro:CCT_domain
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	EnsemblPlantsGene:Os02g0731700	EnsemblPlants:Os02t0731700-02
PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF22
UniProt:Q6Z2L0	SMART:SM00336	UniParc:UPI0000358C01	RefSeq:XP_015622659.1	InterPro:Znf_B-box	SEG:seg

Description

B-box-containing protein 8, CCT domain-containing gene 9, CCT (CO, CO-LIKE and TOC1) domain protein 9, CCT domain protein 9, "Grain number, plant height, and heading date2", CONSTANS-like 1 proteinCCT domain domain containing protein. (Os02t0731700-01);Similar to CONSTANS-like 1 protein. (Os02t0731700-02)

Coordinates

chr2:-:30473739..30475773

Molecular Weight (calculated)

49243.4 Da

IEP (calculated)

6.264

GRAVY (calculated)

-0.606

Length

452 amino acids

Sequence
(BLAST)

001: MSCSSEKAAG AVGGKAARAC DSCLRRRARW YCAADDAFLC QGCDTSVHSA NPLARRHERL RLRVSSPPPL TARASVEEEA AAAVGTTTTT TSKREGGVTP
101: AWSKRKARTR RPQVKSVGQL LSRRLVVPEM AVESSDERKA DEDGAHEELE GQLLYRVPVF DPSLAEFCSP PPIDDAAAAS SSCFKEDAAD GAVEDAKYPA
201: AAASSPVQQL PDSFVNFEPT DAELREFAAD MEALLGQGLD DSNELQDSFY METLGLITPP VEESGRVKME LDGGVASNSR VSLPSCRAHP KPEDVESADV
301: LDIDFNCTSP DEQKSSASNG AAADSQFFHR SLDLRLNYEA IIESWGNSPW TDGRPPHGQL DDFWPNDHHY SGLWAAGGGG HGAEVGMMTV RPRMDGPGRE
401: ARVTRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RPSAAAAPCA VT

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.