Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0026g00730.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68520.1 | VIT_01s0026g00730.t01 | AT1G60010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04231 | Canola | mitochondrion | 7.41 | 72.73 |
| KRH35955 | Soybean | nucleus | 57.64 | 59.43 |
| KRG90815 | Soybean | nucleus | 56.71 | 58.61 |
| Solyc04g007210.2.1 | Tomato | nucleus | 53.47 | 53.97 |
| CDY67920 | Canola | nucleus | 41.67 | 51.72 |
| PGSC0003DMT400037755 | Potato | nucleus | 53.47 | 51.68 |
| CDY65591 | Canola | nucleus | 41.44 | 51.44 |
| Solyc05g009310.2.1 | Tomato | nucleus | 51.62 | 51.03 |
| CDY03851 | Canola | nucleus | 43.29 | 50.27 |
| GSMUA_Achr10P... | Banana | nucleus | 39.81 | 49.0 |
| Bra024750.1-P | Field mustard | nucleus | 46.76 | 48.79 |
| CDY51133 | Canola | nucleus | 42.36 | 48.54 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 42.36 | 48.28 |
| AT1G68520.1 | Thale cress | nucleus | 45.37 | 48.28 |
| CDY53119 | Canola | nucleus | 41.9 | 48.14 |
| CDX77359 | Canola | nucleus | 17.82 | 48.12 |
| Bra012475.1-P | Field mustard | nucleus | 45.37 | 48.04 |
| AT1G25440.1 | Thale cress | nucleus | 46.3 | 47.96 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 40.74 | 47.96 |
| GSMUA_Achr10P... | Banana | nucleus | 42.36 | 47.91 |
| CDY44890 | Canola | nucleus | 43.75 | 47.13 |
| CDX81527 | Canola | nucleus | 43.52 | 46.88 |
| Bra033925.1-P | Field mustard | nucleus | 43.52 | 46.88 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 35.65 | 46.25 |
| VIT_06s0004g07210.t01 | Wine grape | nucleus | 10.42 | 44.55 |
| CDY24402 | Canola | nucleus | 36.81 | 43.09 |
| CDY04230 | Canola | nucleus | 22.92 | 43.04 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 42.82 | 42.82 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 42.59 | 42.59 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 42.13 | 42.52 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 42.36 | 42.17 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 43.98 | 42.04 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 41.44 | 42.02 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 41.9 | 41.9 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 39.12 | 41.22 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 39.12 | 41.22 |
| Os03t0711100-01 | Rice | plastid | 40.05 | 41.09 |
| Bra004035.1-P | Field mustard | nucleus | 44.91 | 40.93 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 38.89 | 40.88 |
| Zm00001d045661_P001 | Maize | nucleus | 42.82 | 40.57 |
| EER88191 | Sorghum | nucleus, plastid | 44.44 | 40.51 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 38.43 | 40.49 |
| Os02t0731700-02 | Rice | nucleus | 42.36 | 40.49 |
| Zm00001d013443_P001 | Maize | plastid | 37.96 | 39.71 |
| Os06t0264200-00 | Rice | plastid | 43.52 | 39.09 |
| EER93585 | Sorghum | plastid | 37.73 | 38.81 |
| Zm00001d017939_P001 | Maize | nucleus | 41.44 | 38.49 |
| PGSC0003DMT400020030 | Potato | nucleus | 50.0 | 38.37 |
| CDY36106 | Canola | nucleus | 32.87 | 36.98 |
| EES05581 | Sorghum | nucleus, plastid | 41.67 | 36.89 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 42.36 | 36.75 |
| Bra010994.1-P | Field mustard | nucleus | 34.26 | 36.36 |
| Zm00001d033719_P001 | Maize | plastid | 38.19 | 35.03 |
| VIT_14s0219g00220.t01 | Wine grape | nucleus, plastid | 18.52 | 25.81 |
| VIT_11s0103g00760.t01 | Wine grape | plastid | 20.83 | 21.58 |
Protein Annotations
| EntrezGene:100264474 | wikigene:100264474 | MapMan:15.5.1.2 | ProteinID:CBI27020 | ProteinID:CBI27020.3 | InterPro:CCT_domain |
| UniProt:D7T949 | EMBL:FN595752 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:IPR010402 |
| EntrezGene:LOC100264474 | wikigene:LOC100264474 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31874 | PANTHER:PTHR31874:SF21 | SMART:SM00336 | TIGR:TC67200 | UniParc:UPI00015C7E3A | ArrayExpress:VIT_01s0011g03520 |
| EnsemblPlantsGene:VIT_01s0011g03520 | EnsemblPlants:VIT_01s0011g03520.t01 | unigene:Vvi.6357 | RefSeq:XP_002282578 | RefSeq:XP_002282578.1 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:3190826..3192777
Molecular Weight (calculated)
47787.2 Da
IEP (calculated)
5.405
GRAVY (calculated)
-0.611
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MISEKNVANA VGGKTARACD SCIRKRARFY CAADDAFLCQ ACDMSVHSAN PLARRHERVR LKTASLKLPG ADSLENSMPS WHQGFTRKAR TPRHGKPAAH
101: PAFKSDELTR NPLPFVPEIG ADETSYDDNE EQLLYRVPIF DPFVAELCAS TNSNEAVTTV ANDTETADVT GSETKALVAG RGHDVDSLHG FLPSDMDLAE
201: FAADVESLLG KGLDNESFGM EGLGLIDCKE KESVEYSLHS GRVKLEEEED IGGVMACQAD AEIDMTREPF ELNFDYGSPA TCEEEEEKVA VGAMDMNNKV
301: DDPKKKNKIL LRLDYEAIIT AWASQGSPWT NGHRPELDPD DCWPDCLGTC GIQVHHPYGE FGGMGEQQAA MGDGGREARV SRYREKRRTR LFSKKIRYEV
401: RKLNAEKRPR MKGRFVKRAS FGGPAAFPLL NK
101: PAFKSDELTR NPLPFVPEIG ADETSYDDNE EQLLYRVPIF DPFVAELCAS TNSNEAVTTV ANDTETADVT GSETKALVAG RGHDVDSLHG FLPSDMDLAE
201: FAADVESLLG KGLDNESFGM EGLGLIDCKE KESVEYSLHS GRVKLEEEED IGGVMACQAD AEIDMTREPF ELNFDYGSPA TCEEEEEKVA VGAMDMNNKV
301: DDPKKKNKIL LRLDYEAIIT AWASQGSPWT NGHRPELDPD DCWPDCLGTC GIQVHHPYGE FGGMGEQQAA MGDGGREARV SRYREKRRTR LFSKKIRYEV
401: RKLNAEKRPR MKGRFVKRAS FGGPAAFPLL NK
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Arabidopsis Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.